PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027300
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 306aa    MW: 33769.5 Da    PI: 6.8
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027300genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-1399152154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ +hn+ Er RR++iN+ ++ Lr+llP+ + + p kK+s   ++ k+ +YI  L
  Lus10027300  99 KKLNHNASERHRRKKINTLYSSLRSLLPQsD-HHPTKKVSIPITVSKVLKYIPTL 152
                  6789*************************65.899999**************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.09E-1496170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.58698152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1099152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1299167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.39E-10101157No hitNo description
SMARTSM003533.8E-9104158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAASRLEPYS NHYSPFQHTT MLAMSSTSSS TNFGGSSSWP SNSLLLEDPL ITLLPNYHTN  60
QDHQSSTSPP PFFCVPAAAE PEHQLKGSST GSGGTTTTKK LNHNASERHR RKKINTLYSS  120
LRSLLPQSDH HPTKKVSIPI TVSKVLKYIP TLEQEVEALV QKKKELLSTI PNHNQDFDHG  180
YNGDDDLGRS GNQTSSFSPS SSSLMSSSST VSTSWISEEE VMVQVSIACD DNNNIFPTSE  240
ILLHLQHSGF TLLNSSSFES FRGRGFYNFH LQVESSHGVE VVDTEALSEK LLRLYESKPR  300
IIIRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100273000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-31bHLH family protein