PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027242
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 156aa    MW: 17417.8 Da    PI: 4.376
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027242genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB734.8e-231194386
        NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf +y+e++ + 
  Lus10027242 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCGREEKRTIAPEHVLKALEVLGFGEYIEEVYAA 94
                 6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.6E-398138IPR009072Histone-fold
SuperFamilySSF471131.84E-3412140IPR009072Histone-fold
PfamPF008084.1E-201479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE  60
VCGREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKL ETMQDTLKGG KWTGTEMTEE  120
QAAAEQQRMF AEARARMNGG VPAPKQPEDD RSLEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B9e-341213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021647608.12e-99protein Dr1 homolog isoform X1
SwissprotP495923e-92NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A067J8H89e-98A0A067J8H8_JATCU; Uncharacterized protein
TrEMBLA0A1R3H0F67e-98A0A1R3H0F6_9ROSI; Transcription factor CBF/NF-Y/archaeal histone
STRINGLus100272421e-112(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-74nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]