PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10027227

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 306aa MW: 34897.8 Da PI: 6.6789

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10027227	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.5e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelv++yL++++++k++++ ++i +vd++k ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tg+dke++++ +g Lus10027227 6 LPPGFRFHPTDEELVSFYLTRRISDKSFTC-KAIVDVDLNKNEPWDLPGKASMGEKEWYFFNVRDRKYPTGLRTNRATEAGYWKTTGRDKEIFCTtTG 102 79*************************9.88***********988999***********************************98788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grapkg+k++Wv+he+rl Lus10027227 103 VLVGMKKTLVFYQGRAPKGQKSNWVIHEFRL 133 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-61	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	59.333	6	157	IPR003441	NAC domain
Pfam	PF02365	7.6E-27	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEEINLPPGF RFHPTDEELV SFYLTRRISD KSFTCKAIVD VDLNKNEPWD LPGKASMGEK 60 EWYFFNVRDR KYPTGLRTNR ATEAGYWKTT GRDKEIFCTT TGVLVGMKKT LVFYQGRAPK 120 GQKSNWVIHE FRLHNINNNH SYKSNKEEWV VCRVFHKNST PAKKPQQDQS TSSPSSSQDD 180 DINIDFANID RYFNPHLNGA VSTYNNYNNL HNDQVGPSTS TTSFPWPITT TDHNLLAASN 240 LTMNYSLILK ALQLRNYQER EAGGXXXXPG AAAADYSSML SLDHHETPLP LEQPSEEPFN 300 MDSIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-55	1	163	15	174	NAC domain-containing protein 19
3swm_B	4e-55	1	163	15	174	NAC domain-containing protein 19
3swm_C	4e-55	1	163	15	174	NAC domain-containing protein 19
3swm_D	4e-55	1	163	15	174	NAC domain-containing protein 19
3swp_A	4e-55	1	163	15	174	NAC domain-containing protein 19
3swp_B	4e-55	1	163	15	174	NAC domain-containing protein 19
3swp_C	4e-55	1	163	15	174	NAC domain-containing protein 19
3swp_D	4e-55	1	163	15	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10027227

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438025.1	1e-106	NAC domain-containing protein 92
Swissprot	Q9FLJ2	2e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2K1Y9E5	1e-105	A0A2K1Y9E5_POPTR; Uncharacterized protein
STRING	Lus10027227	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	2e-88	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Lus10027227

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]