PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10027220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 29838.6 Da PI: 6.9314 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 211 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k F + L H ++H Lus10027220 211 FKCSICDKEFESGQALGGHKKVH 233 89**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.16E-5 | 4 | 34 | No hit | No description |
SMART | SM00355 | 0.22 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-8 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.62E-8 | 138 | 162 | No hit | No description |
Pfam | PF13912 | 1.4E-9 | 140 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.085 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 140 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.62E-8 | 206 | 233 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 211 | 238 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-10 | 211 | 233 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 211 | 233 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 213 | 233 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MNNNQPRSCK ICNRWFPTGK SMGGHMRSHL AKLPLPPKPY IPPPPPPQQQ PAGGLLLTSP 60 DPPAPAPSSS PSSTLVNSTE DEDSSFPVMT RTRSVRRKRT LPPPPPPPKQ ITSSGEEEAE 120 VAMCLLMMSF GRGGGGGKLY RCEKCNRGFG SYQALGGHRA SHNKAGRRLV MMDYDDEEEE 180 EEEEEEDDDE YYHHIIDEED GRVGSNSRRM FKCSICDKEF ESGQALGGHK KVHFAEMNKM 240 KKKRRLILSI DLNSPVPDDD DAYRLSR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 240 | 244 | KKKRR |
2 | 240 | 245 | KKKRRL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10027220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ230845 | 3e-67 | HQ230845.1 Linum usitatissimum clone 061070_2262_0885 microsatellite sequences. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10027220 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15389 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10027220 |