PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027139
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 718aa    MW: 77655.5 Da    PI: 6.4334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027139genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32299356260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Lus10027139 299 DDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCPVKKKVERSH-EGHITEIIYKGAHNHPK 356
                  8****************************************.***************85 PP
2WRKY102.81.9e-32503561159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Lus10027139 503 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 561
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.306293357IPR003657WRKY domain
SuperFamilySSF1182903.92E-26297357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-29297357IPR003657WRKY domain
SMARTSM007744.1E-37298356IPR003657WRKY domain
PfamPF031062.0E-25299355IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-37488563IPR003657WRKY domain
SuperFamilySSF1182901.96E-28495563IPR003657WRKY domain
PROSITE profilePS5081138.32498563IPR003657WRKY domain
SMARTSM007741.9E-37503562IPR003657WRKY domain
PfamPF031067.3E-25504561IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAGLGDNVAI IRDWLPPTPS PRAFFSTILG DDMSTRPNSD QSGETRMDGL FFGTRQLMTA  60
AGNAGSRDAG TVSQVTDSGP FSEHNNTNTT PRGGLVERMA ARAGFNVPKL NTESIMRSTD  120
LSLNPQSPYL TIPPGLSPTS LLDSPVFVNS LAQPSPTTGK FSFFPNGNSK GLMSEPSYTS  180
KDNFFEDFNS SFAFKTFPEM NSPFLTCPPT KVAPVTLQQQ FPSSEASVQS ENSHAQNKQS  240
LHFASYFSNS DKENHGKVIV NDTVGGGNAV NSPTLDDQDE EGDRGGDSSI AGAGGAPADD  300
GYNWRKYGQK QVKGSEYPRS YYKCTHQNCP VKKKVERSHE GHITEIIYKG AHNHPKPPPS  360
RRAAIGGSSS YSLMDMPLEN PEQTGAENDP AWAGTHNKGT ADNNIEVTSS ASAAPEFGNF  420
QAQNRAHFES SEAAVDASST FSNEEEDEDR ATHASVGNDG EEDESDSKRR KIETFTAAEM  480
SGATRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NAGCTVRKHV  540
ERASHDLKSV ITTYEGKHNH DVPAARNSSH VGSGASSATP APYQSAAQLS RPEPPQVHNS  600
MNRGFDRSAA FGTFRRQQQM VGGPSSSGFS FGMNQPGFAN LAMAGLCDGQ PKMPMLPSMN  660
PYLAAGQHQQ RPFGEMGFMM PKGEPKMEPV SEPGLNLSNN QAMYQQIMNR LPLGPHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36299564878Probable WRKY transcription factor 4
2lex_A1e-36299564878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297890.0EU829789.1 Linum usitatissimum clone LU0006A11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678272.10.0probable WRKY transcription factor 2
RefseqXP_021678273.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-178WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM9TIF00.0M9TIF0_JATCU; WRKY transcription factor 11
STRINGLus100271390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-165WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]