PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026909
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 352aa    MW: 38057.4 Da    PI: 5.1351
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026909genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box279.6e-09443437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 + C+ +++  + lfC+ ++ +lC +C +++H        H
  Lus10026909  4 KLCDSCKSATAALFCRPDSAFLCVSCDSKIHAAnklasrH 43
                 58*****************************554555555 PP
2zf-B_box27.85.1e-094691342
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Lus10026909 46 VWVCEVCEQAPAHVTCKADAAALCVSCDRDIHSAnplarrHERVPI 91
                 689*****************************66899999*99997 PP
3CCT69.87.2e-24289332144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lus10026909 289 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRK 332
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.409148IPR000315B-box-type zinc finger
PfamPF006433.7E-6443IPR000315B-box-type zinc finger
CDDcd000212.01E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006431.3E-74691IPR000315B-box-type zinc finger
CDDcd000211.60E-94791No hitNo description
SMARTSM003368.8E-114991IPR000315B-box-type zinc finger
PfamPF062035.6E-18289331IPR010402CCT domain
PROSITE profilePS5101716.896289331IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MASKLCDSCK SATAALFCRP DSAFLCVSCD SKIHAANKLA SRHPRVWVCE VCEQAPAHVT  60
CKADAAALCV SCDRDIHSAN PLARRHERVP IVPFYDSVSS GDTPATVKSS DAAATAVAVN  120
FLDDRYFADD VDVDDNVSRE EAEAASWLLP NPGNNKAIDN QSSDLELNTG QFLFGEMDPY  180
LDLDYGTTVD PKIEAQEQNS SGSDGVVPHV GGGQAPVMMN DHCFEFDFSA DGSKAFAAYG  240
YSAQCLSHSV SSSSIDVGVV PEGCAMTEIS NPAADSAVSQ AVPLSAADRE ARVMRYREKR  300
KNRKFEKTIR YASRKAYAET RPRIKGRFAK RKDMEVEADR SMYGFGVVPS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076376.11e-169zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-139COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A067KBG61e-168A0A067KBG6_JATCU; Uncharacterized protein
STRINGLus100269090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-131CONSTANS-like 4