PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026838
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 707aa    MW: 76451.9 Da    PI: 7.1907
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026838genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.9e-32241298260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +Dgy+WrKYGqK+vkgse+prsYY+Cts++C+vkkk++rs+ d++++ei+Y+g Hnh+k
  Lus10026838 241 EDGYSWRKYGQKQVKGSEYPRSYYKCTSPSCQVKKKIDRSH-DGQITEIIYKGAHNHPK 298
                  7****************************************.***************85 PP
2WRKY102.13.3e-32448506159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver++++ k+v++tYeg+Hnh+
  Lus10026838 448 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCTVRKHVERASHNLKYVITTYEGKHNHQ 506
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-27238298IPR003657WRKY domain
SuperFamilySSF1182906.8E-24239298IPR003657WRKY domain
SMARTSM007745.1E-34240298IPR003657WRKY domain
PfamPF031064.2E-24241297IPR003657WRKY domain
PROSITE profilePS5081122.687241299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-35433508IPR003657WRKY domain
SuperFamilySSF1182904.97E-28441508IPR003657WRKY domain
PROSITE profilePS5081137.195443508IPR003657WRKY domain
SMARTSM007744.9E-37448507IPR003657WRKY domain
PfamPF031062.2E-24449506IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MKHQRYPPPT DSLAGSDTAD ARGSIADRRA ATCGFNADRI NTPRFRTNIN TPFASSSSSS  60
SSPFITIPSG ISPSALLDSP ILLPNPQPSP TTGTFPAPLL SYEIAALNGS RDPDASADTS  120
AFRLKPPLND SHPTLSNFDD QVYTVGPQVL ALADTPMDFE FPAEFSKEAA ATVCSRDLVI  180
DMKPANSMTQ PNFIDAQVCG SDVPSNQTST KRGPIKGKID GMHTEDQKGT IMGTGGGRTS  240
EDGYSWRKYG QKQVKGSEYP RSYYKCTSPS CQVKKKIDRS HDGQITEIIY KGAHNHPKTQ  300
SVRRAEPDWC HDVPEIDDGN ESCVKTEAGS GQKNNEPGSD WRAEGMERTS SPSVVTELYD  360
LLSTGLGKPV VTVESVGTPE LSSTVISHED DDDGITQGSI SIGGYTDEEE SDSKRRKTES  420
CMVEANMTSR AVREPRVVVQ IESEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTSPGCT  480
VRKHVERASH NLKYVITTYE GKHNHQVPVA RTGNTLSSNS CSLSSALSNL QPGSALARGL  540
SSLKQESQVQ RSSSSSVFNN SEYMRSSSFS GNLVSEMKVG GPSLYPMKFP AVQSSMAYGS  600
YGFNSNRTTP VHLPGSMASL IPQFPRSSLS SNLHTLGGIE MLNNGSGMGM GMSLMGQVHQ  660
PYFPAAGGGQ QLMMMRKQER RDDNVYNSSS TSSSVLNQRI MGNFAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-34241508877Probable WRKY transcription factor 4
2lex_A8e-34241508877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085758.10.0WRKY transcription factor SUSIBA2 isoform X3
SwissprotQ9FG774e-88WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2C9UUC10.0A0A2C9UUC1_MANES; Uncharacterized protein
STRINGLus100268380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-89WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]