PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026787
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 489aa    MW: 53483.9 Da    PI: 5.2168
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
      Lus10026787 30 KGPWTSGEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 77
                     79******************************************9986 PP
2Myb_DNA-binding521.6e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E+ l++++++++G++ W++ a++m+ gRt++++k++w++
      Lus10026787  83 KGAFTPDEERLIIELHAKMGNK-WARMAAEMP-GRTDNEIKNYWNT 126
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9022577IPR017930Myb domain
SuperFamilySSF466892.36E-3028124IPR009057Homeodomain-like
SMARTSM007173.5E-142979IPR001005SANT/Myb domain
PfamPF002496.4E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-233184IPR009057Homeodomain-like
CDDcd001671.91E-103277No hitNo description
PROSITE profilePS5129426.10778132IPR017930Myb domain
SMARTSM007172.8E-1682130IPR001005SANT/Myb domain
PfamPF002491.6E-1583126IPR001005SANT/Myb domain
CDDcd001672.44E-1285126No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2585131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MPNGGEEKKR SKGRRESTLG IEQGSSALKK GPWTSGEDAI LVEYVTKHGE GNWNAVQKHS  60
GLSRCGKSCR LRWANHLRPD LRKGAFTPDE ERLIIELHAK MGNKWARMAA EMPGRTDNEI  120
KNYWNTRIKR QQRAGLPIYP PEICSKIRDG SQESMGTDSN ADGLPDPAQN HLREIPELNF  180
KNLKINHGVL SYLPNLLDVP ASSFLKQGLG SSHDYGFILP TLPPPPKRLR ADSILPDVDG  240
SAVSSGFPPF CQFTDYACES IPEHFGCLTS PYDSDDQPPM AVLPGSHALL HDDSSSSEPV  300
SRAMKLELPS LQYTETQQLD SWGTSSSPLL SADSVDNLIQ TPPTESDCFS PRSSGLLEAV  360
LYESQMLGNM NGSSLAPEDM MNHPSQPLNS RKRDLEVQTD PNSPLGHPAA SVFNASTPMS  420
GSSLDEPGIC IILEYAKYTF CIGYEMKQEM GSQVSTPCVE DNDGSSCRHI DFSRPDVLLG  480
LGSYFGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32241311107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026787
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598621.10.0transcription factor GAMYB-like
RefseqXP_021598631.10.0transcription factor GAMYB-like
TrEMBLA0A251LHX70.0A0A251LHX7_MANES; Uncharacterized protein
STRINGLus100267870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.15e-90myb domain protein 65