PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026780
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 300aa    MW: 33558.4 Da    PI: 5.3366
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026780genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.37.2e-186861898
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                 ++++P arikki+++ded+ +i+  +P l+ska elf+ +l  +++  +     +tl+ s ++++v++ ++fdfl +iv +
  Lus10026780  6 DTRFPAARIKKIMQTDEDIGKIAMAVPLLVSKALELFLQDLCDQTYDITLRRGAKTLNSSHLKQCVQKFNVFDFLREIVGK 86
                 5789************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-26272IPR009072Histone-fold
SuperFamilySSF471131.06E-19387IPR009072Histone-fold
PfamPF008084.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKKKLDTRFP AARIKKIMQT DEDIGKIAMA VPLLVSKALE LFLQDLCDQT YDITLRRGAK  60
TLNSSHLKQC VQKFNVFDFL REIVGKVPDL GGSDAVADDQ HGTKRRKVAD VEAVKNDKYC  120
DREVRVHDIG PRSSSGRGRG RSRGRGRGRG RTGERQPSTQ YGKYEDDPDM GQDDDHKYSP  180
ELGRLHNGRE PENLKENVPP SMNRSTPVHD FDLNAELDEN GYSKSVSPAA AQTIEVGAFS  240
AAGERSSISQ KTSLLKKEED IEFPGWSLAQ VQKMDIDPML QLANLSRMDE DDEDYDEED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140150RSRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042017.16e-97PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBLA0A2C9WN078e-86A0A2C9WN07_MANES; Uncharacterized protein
STRINGLus100267800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.19e-59NF-YC family protein