PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026724 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 28730.7 Da PI: 4.6491 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.8 | 2.3e-14 | 166 | 250 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ + + s+ ++++ ++p +f+ eh + + e++++ + ++W v++ r ++ +++ +GW +F+++n Lk gD++vFk++ +s Lus10026724 166 FEIKIKASHLCSRQQRRIPLSFTMEHsFMREVEQVKMEV---GDNVWPVRV--RLACNMyVLIPAGWIRFAEDNSLKLGDVCVFKVMATS 250 6667788999999*************8555556544444...55*******..88888846678*********************76543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-14 | 161 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-13 | 162 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.91E-15 | 165 | 245 | No hit | No description |
SMART | SM01019 | 7.2E-8 | 166 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 166 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.997 | 166 | 260 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASTISFPCM QRIPRKFIST EFGQQLLGCD AATLEVRFPL ETNGKLGWRG IDKGSFGSTT 60 MHGGDLQSST LWTMATSSLS IVTCDISATE IVYPTLSNVD RVVEIERDDS LSLEIVGEVD 120 DTAANEKGKS PIVDDSAETI INEEKEGTNL DDDASGNLFG SGHTLFEIKI KASHLCSRQQ 180 RRIPLSFTME HSFMREVEQV KMEVGDNVWP VRVRLACNMY VLIPAGWIRF AEDNSLKLGD 240 VCVFKVMATS PEVRTIIRGV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026724 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10026724 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Link Out ? help Back to Top | |
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Phytozome | Lus10026724 |