PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026654
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 442aa    MW: 49330.9 Da    PI: 8.4167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026654genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054377399123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k+F++   L  H r+H
  Lus10026654 377 HECPFCSKVFRSGQALGGHKRSH 399
                  78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-4532IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.72E-6634No hitNo description
PROSITE profilePS501579.058936IPR007087Zinc finger, C2H2
PfamPF139120.0029927IPR007087Zinc finger, C2H2
SMARTSM003550.37931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.47394121IPR007087Zinc finger, C2H2
SMARTSM003550.07694116IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.23E-895116No hitNo description
PfamPF139121.1E-696117IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-8372399No hitNo description
PfamPF139122.2E-11376399IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723377399IPR007087Zinc finger, C2H2
SMARTSM003550.018377399IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280379399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
METNQKKKFV CKFCNKRYPC GKSLGGHIRI HQNGNYSSSA DHHYLPPEDD HHHKKDSSSA  60
DGYILREHPK KTRRFETNLA ANNSNNPTNG NLIQVCKECG KGFQSLKALC GHMACHSRNY  120
SFDEDRSDDT SEKLMMEEDL VLMDDQNSDT ETSAAPSKRR RSKRMMRYKN IGVTNVHSSS  180
ASIASDLEQD NQEEVALCLM MLSKDSSLKG CNLNFVAADS SDNNSVVTKM RIKVKKNNEK  240
NDKNGSSCYD DEENSFMEMK VARKKHQVVI SSDNDQNSDS GYFNYGPKKV EEPEVVSFHE  300
KKPAKPVLAS SKTNNNYHKR ARESSDNIYE SGENSFETET TKTVTKKVNN GKNHHPPAKS  360
NNKLSANAAA AKKAKVHECP FCSKVFRSGQ ALGGHKRSHF VGGAEDTTVV LKQQVAEIPM  420
IDLNLPAPVD HEEQATGFVT W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026654
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624190.12e-97uncharacterized protein LOC110623518
TrEMBLA0A2C9WHN74e-96A0A2C9WHN7_MANES; Uncharacterized protein
STRINGLus100266540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-40C2H2-like zinc finger protein