PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026634
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 442aa    MW: 47761.1 Da    PI: 8.5513
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026634genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1101.1e-34197253259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Lus10026634 197 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPKCPVKKKVERSL-DGQVTEIIYKGQHNHP 253
                  8****************************************.***************8 PP
2WRKY100.21.3e-31344402159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a d ++v++tYeg+H h+
  Lus10026634 344 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAALDSRAVITTYEGKHYHD 402
                  59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30190255IPR003657WRKY domain
SuperFamilySSF1182907.85E-27194255IPR003657WRKY domain
SMARTSM007741.1E-38196254IPR003657WRKY domain
PROSITE profilePS5081123.801197255IPR003657WRKY domain
PfamPF031061.5E-26197253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-35329404IPR003657WRKY domain
SuperFamilySSF1182902.75E-28336404IPR003657WRKY domain
PROSITE profilePS5081137.264339404IPR003657WRKY domain
SMARTSM007749.3E-37344403IPR003657WRKY domain
PfamPF031063.3E-24345401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAENEGQGPP PRSSRPTNIT LPPRSFGEMF AAAGGGGGTP NGFGLSPGPM TLVSRFFSAD  60
GGGGGGEDFK NFSQLLAGVM SPAAATNGST KAEEEKEGFS KVSSLAAAPT PPASAMFMVP  120
AALLDSPGMG LFSPQGPYGV SHQQALAQFT SQMTSSTPEP MVQQQQIVPV SESAKIEPLT  180
GSFIPNVSSF VIDKPADDGY NWRKYGQKQV KGSEFPRSYY KCTHPKCPVK KKVERSLDGQ  240
VTEIIYKGQH NHPPPQSGKR TGQVNVESGS QSSNLKRKEQ ESSSQATGDH LSVTSDSDEN  300
DEDEPDAKRR NVEVKVTEPT SSSSHRTVTE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG  360
NPYPRSYYKC TTQGCNVRKH VERAALDSRA VITTYEGKHY HDVPAAKHSS HNIASSLNRI  420
ASNNQHQQSI VQLRLKDEQM T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39197405878Probable WRKY transcription factor 4
2lex_A1e-39197405878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026634
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685222.11e-157probable WRKY transcription factor 3
SwissprotQ9ZQ701e-138WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2C9WIN71e-152A0A2C9WIN7_MANES; Uncharacterized protein
STRINGLus100266340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-123WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]