PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 76138.8 Da PI: 8.0435 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.4e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ Lus10026510 127 FAKTLTQSDANNGGGFSVPRYCAETIfpkldytADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFL--RAENGD 220 89****************************997555555..89***********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Lus10026510 221 LCVGIRRA 228 9****997 PP | |||||||
2 | Auxin_resp | 113.2 | 2.5e-37 | 290 | 373 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++++FevvY+Pras++eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+ Lus10026510 290 AATRAENGQPFEVVYYPRASAPEFCVKASLVKSALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVHFADPLHWPDSPWRLLQ 373 78999*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-37 | 119 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-29 | 120 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.36E-22 | 126 | 227 | No hit | No description |
SMART | SM01019 | 5.1E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.07 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.4E-32 | 290 | 373 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.361 | 593 | 673 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MITFMEAKDK LKEVDKCLDS QLWHACAGGM VQMPQVNSRV FYFPQGHAEH STGPVNFRTT 60 LPNLRPYILS RISAIKFMAD PETDEVYAKM KLAPVTSSGD GSDFDDDQGL MNGEGPENNN 120 KQAPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPKLDYTA DPPVQTILAK DVHGETWKFR 180 HIYRGTPRRH LLTTGWSAFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPESSW 240 NPAGGNNYGG FSSFLREEEN KLSRNGNNGN SGNGNLMGRG KVRPDSVIEA ATRAENGQPF 300 EVVYYPRASA PEFCVKASLV KSALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVHFAD 360 PLHWPDSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPHHP 420 DFPLDGQFPM PMFTGNLIGH HHSSPFGCLP DHNTTTPAGM QGARHAHYGL PLSDLQHFNN 480 KIQTTGHLFP PLVQRQQHMI VPKPSMSSES ISCLLTMGNS TNQSTTPKFK PNEAKAVHQF 540 VLFGKPILTE QQISLSGSGD TASPNYKRNN SSDGPEPSPA REGSNHLETE PASHQCRVFF 600 ESDEVGRPID LSSMRSYDEL HRKIAEMFQV ENPETLSNIL YRDLVGIVRH IGDEPYSEFA 660 RNARRLTILT DSSSDNVGRT RQKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-81 | 8 | 394 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519531.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | B9S0L2 | 0.0 | B9S0L2_RICCO; Auxin response factor | ||||
STRING | Lus10026510 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Lus10026510 |
Publications ? help Back to Top | |||
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