PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 482aa MW: 52718.1 Da PI: 9.5697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00013 | 83 | 103 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Lus10026497 83 CEICNKGFQRDQNLQLHRRGH 103 *******************88 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + s+ k H +t+ Lus10026497 158 WKCEKCSKKYAVLSDWKAHSKTC 180 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 80 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.62E-7 | 80 | 103 | No hit | No description |
SMART | SM00355 | 0.11 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 123 | 153 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 146 | 179 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.62E-7 | 153 | 178 | No hit | No description |
SMART | SM00355 | 180 | 158 | 178 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MMSSGGGDPF SLTLPSFFPS SQHEQTHQLP PLPPPPLAAD ANPNPNLPSN NRKKRNLPGT 60 PDPDAEVMAL SPKSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNTKEPIRK 120 KVYICPEKTC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVL SDWKAHSKTC 180 GTREYKCDCG TLFSRKDSFI THRAFCDALA DDSLRFSSTN AAAAATNLNF ESIGNNTQSG 240 NNNPSQLPRH QQGFHNQNIN SQFGNFINSM AAGNNNGMNM MMTMMPNNNA TGGNGSYLTD 300 EMVQIGRSSS SLSSGSGMKE EVLPSLYSNQ MMSHENKQQQ SNGGRSPMSA TALLQKAAQI 360 GSTRSSSSGG GTIVNNTQQS SLFGMTTMPP PMDHNSFEQL MMMQGSGKLQ SVGIMESIIN 420 NNDNQNNNNY TSDSMESRLT RDFLGMSGGR PFLQQEIERF ANSMSSPSSL GFAATASGNP 480 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-35 | 154 | 218 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 8e-35 | 154 | 218 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 120 | KLKQRNTKEPIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026497 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619709.1 | 1e-142 | zinc finger protein JACKDAW-like | ||||
Swissprot | Q700D2 | 1e-128 | IDD10_ARATH; Zinc finger protein JACKDAW | ||||
TrEMBL | A0A2C9VC91 | 1e-141 | A0A2C9VC91_MANES; Uncharacterized protein | ||||
STRING | Lus10026497 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-98 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10026497 |
Publications ? help Back to Top | |||
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