PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026496
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 355aa    MW: 40541.9 Da    PI: 5.5621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026496genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-50111381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF Ptdeel+v+yLk+++ +++l++ ++i+e+d+yk++Pw+Lpk++  +++ewyfF++r++ky++g r+nra+ sg+Wkatg+dk++ls+ + 
  Lus10026496  11 LPPGFRFYPTDEELIVQYLKNRIGSRPLPA-SIIAEIDLYKYDPWELPKQALFGDEEWYFFTPRERKYPNGARPNRAAGSGFWKATGTDKPILSSnDM 107
                  79****************************.89***************888889***************************************98566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vg+kk Lvfykgr pkg ktdW+m eyrl
  Lus10026496 108 ASVGVKKALVFYKGRPPKGIKTDWIMYEYRL 138
                  77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-608164IPR003441NAC domain
PROSITE profilePS5100559.33311164IPR003441NAC domain
PfamPF023651.8E-2412138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEMNTSSDIH LPPGFRFYPT DEELIVQYLK NRIGSRPLPA SIIAEIDLYK YDPWELPKQA  60
LFGDEEWYFF TPRERKYPNG ARPNRAAGSG FWKATGTDKP ILSSNDMASV GVKKALVFYK  120
GRPPKGIKTD WIMYEYRLPD ALCNPRQKGS MRLDDWVLCR VKQKCSSPRS IWEDQSASVQ  180
ELPRTFPKQH ELQMNVNLFK SINVAPSVEL VKNHVGKTAN TELSEDMVRS YLTNPNDEMV  240
KNYLYKECPM LPYIFASQEF PCTKPASSIN IQSSEKSSIS GYAEDSDDKN FQFSSVISLD  300
NFFNPLKRKD MQIDQQDSSF PLRKKPKTGG LEEDVSISIC DDTFDISFCG DDQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-6921678168NO APICAL MERISTEM PROTEIN
1ut4_B5e-6921678168NO APICAL MERISTEM PROTEIN
1ut7_A5e-6921678168NO APICAL MERISTEM PROTEIN
1ut7_B5e-6921678168NO APICAL MERISTEM PROTEIN
4dul_A5e-6921678168NAC domain-containing protein 19
4dul_B5e-6921678168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327LRKKPKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026496
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022746670.11e-120NAC domain-containing protein 2-like
TrEMBLA0A061ET241e-116A0A061ET24_THECC; NAC domain protein, IPR003441, putative
STRINGLus100264960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-80NAC domain containing protein 25