PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026432
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 456aa    MW: 51111.6 Da    PI: 7.2054
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026432genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.6e-083684051954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Lus10026432 368 FHNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 405
                  776679******************************87 PP
2BELL85.56.2e-28250319272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +q+lq+kk++Llsll++Vd+rY+q+v++++t++s+F+a+++l++ +++t++Al++iS+ ++ Lk +i++qi
  Lus10026432 250 KQALQAKKVQLLSLLQMVDNRYNQCVDEIHTIVSAFHAATELDP-QIHTRFALQTISFMYKDLKGRISNQI 319
                  799*****************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-28180317IPR006563POX domain
PfamPF075266.2E-29185316IPR006563POX domain
PROSITE profilePS5007110.754346409IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-25349421IPR009057Homeodomain-like
CDDcd000863.23E-10349410No hitNo description
SMARTSM003893.1E-5349413IPR001356Homeobox domain
SuperFamilySSF466892.3E-15351419IPR009057Homeodomain-like
PfamPF059201.5E-14366405IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MENDLYTNVG MDMESRNWFR ASSADRMTSQ EGTTSSPLLL HSIDFNNRQQ QNQRSVYYRS  60
MLVEPSNNNN MFHHLHQDAH ALSYSGPSLL HPLEMAANYQ VPNDSGVLPF ALEGGYGGFE  120
SSCSPELVSC YNIDCGVELS TENPPPCSRI SNKLCLSLAT SQNSEQICSN RNELSLYRGG  180
RFSQVVSGSK YLNVVQEILG QIASCSLENL DTPSYSITSG ASAQTSWHHP AAEQGVQAFE  240
IQPPDPALQK QALQAKKVQL LSLLQMVDNR YNQCVDEIHT IVSAFHAATE LDPQIHTRFA  300
LQTISFMYKD LKGRISNQIL VMGPDYSCND LEKQWSLGQQ LKKKEHQFWR PQRGLPERSV  360
AVLRAWMFHN FLHPYPKDAE KHLLAVKSGL TRSQVSNWFI NARVRVWKPM IEEMYAEMNR  420
RKGPSGTTTT NSSSNLTTSQ ISIRNPILVP APPAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026432
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596775.11e-125homeobox protein ATH1-like
RefseqXP_021596776.11e-125homeobox protein ATH1-like
SwissprotP487313e-98ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2C9UA031e-123A0A2C9UA03_MANES; Uncharacterized protein
STRINGLus100264320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-89homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]