PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25748.1 Da PI: 5.3578 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 126 | 219 | 6 | 93 |
..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS....-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg....rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ ++++ +++++p +fa+++ + ++ ++++++ ++ ++ ++ v++ +k++ + y+ ++ W F kan+L+ gD+++ + +++++ v Lus10026425 126 IRQSYFRDNCVMIPVEFARDYlewKDQTVKPIQVSHNNHQNhkskKEGFVEVMKNKTKVEmYMGKQDWPTFTKANHLQLGDVCTSEGMDDDDN--V 219 5567778888**************88888998899888777555444445553344443359999*******************997776555..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-8 | 121 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-7 | 124 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.5E-8 | 126 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MQSHPTINLD AGKETTGFED VDANISVQSI QPIISFVYTS FNLGYLKCVL VEIPFVDIEN 60 QGMASGSQTF RKGFRDMEIE NDVEEVGDEI FVDISSNSNT SPRKGRRCMK QSRGKAKIFQ 120 SCDAVIRQSY FRDNCVMIPV EFARDYLEWK DQTVKPIQVS HNNHQNHKSK KEGFVEVMKN 180 KTKVEMYMGK QDWPTFTKAN HLQLGDVCTS EGMDDDDNVL VLCSHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026425 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10026425 | 1e-170 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
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Phytozome | Lus10026425 |