PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026373

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 305aa MW: 34777.2 Da PI: 5.216

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026373	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s + Lus10026373 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELSeKsFLPSKDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVVS-Q 101 79**************************.99**********84335556788**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLv+y+grap+g +tdWvmheyr+ Lus10026373 102 TRVIGMKKTLVYYRGRAPQGLRTDWVMHEYRV 133 99**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.161	6	156	IPR003441	NAC domain
Pfam	PF02365	3.8E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LSEKSFLPSK 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVVS QTRVIGMKKT LVYYRGRAPQ 120 GLRTDWVMHE YRVDDKDCED TSGLQDSYAL CRVFKKNGIC TETAEQEIQQ SFVYGGGGAT 180 SSSTARRNRT SPAAIMETAP DQAAMHNDIN HIMIDQYNNN DSTMSPDVPV NASSSSCLDD 240 DEKDVDDNSW MQFITDDDPW SSSSVVNGGD DVTYQQQQQQ PQVHHNHHQQ HHRQVSANTS 300 TFTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-54	4	157	13	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026373

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	2e-35	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374257.1	1e-130	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	3e-89	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A2P5CQG0	1e-130	A0A2P5CQG0_TREOI; NAC domain containing protein
STRING	Lus10026373	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9564	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-120	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Lus10026373

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]