PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 435aa MW: 49479.5 Da PI: 8.2308 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.7e-14 | 18 | 87 | 13 | 90 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++rl++p f ++ +g + +l+++sg+s+ v+ sgr + ++GWkeFv ++ L +gDf+vF++d++ + f Lus10026264 18 EHRLSIPVAFSKHLNGA----EDAVLRSSSGKSYPVNT-----SGREFKGEGWKEFVADQSLHVGDFLVFRYDNTqKVF 87 578*******9555555....379**************.....44446799********************98754443 PP | |||||||
2 | B3 | 53.7 | 3.7e-17 | 153 | 253 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ff v++++++lk++rl +pk+fa+++++++ +++ +l +e+grsW v + kk + + l++G +F ++n+L+ gD++ ++l++ ++++ Lus10026264 153 FFVVTMRKYNLKKNRLLIPKEFARDNDLESMSHRSAILLNEEGRSWPVDMHSYKKHCFgkyfhqVALRRGIDRFQEENNLELGDTFNLELVQ-GGENP 249 889999********************99999999***************9543333334666668899*********************998.67777 PP EEEE CS B3 93 vvkv 96 v+k+ Lus10026264 250 VFKM 253 8775 PP | |||||||
3 | B3 | 55.7 | 9.3e-18 | 297 | 386 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v ++ +l++ +l++p +f+e++g+ ++l++e+g s+ v l+ + k+gr v+++GWke v++ngLkegD+++F+l+++ ++++v+ Lus10026264 297 LVKMTRTYLTRYLLYIPLDFTEKNGLTADLIPSMILRNEEGSSFPVGLK-TMKGGRAVIKSGWKEVVQENGLKEGDVLLFQLIET-GTKPVM 386 4556778888889***********777776678***************5.6777789*************************984.444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-15 | 5 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.152 | 6 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-15 | 6 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.77E-16 | 8 | 93 | No hit | No description |
SMART | SM01019 | 2.3E-10 | 9 | 93 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-11 | 18 | 85 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-17 | 148 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-15 | 149 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-13 | 152 | 252 | No hit | No description |
Pfam | PF02362 | 6.3E-16 | 153 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 153 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-11 | 153 | 257 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 290 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-19 | 293 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-16 | 294 | 388 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 295 | 391 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-16 | 296 | 392 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-16 | 297 | 386 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MADGGKQHFF RPLLPGFEHR LSIPVAFSKH LNGAEDAVLR SSSGKSYPVN TSGREFKGEG 60 WKEFVADQSL HVGDFLVFRY DNTQKVFDIM SFDPSACEFQ YPPSSSSTLP LHASVRTEHD 120 DAEEALDNNS GRKRKETDQL QDKGGRSMPT NPFFVVTMRK YNLKKNRLLI PKEFARDNDL 180 ESMSHRSAIL LNEEGRSWPV DMHSYKKHCF GKYFHQVALR RGIDRFQEEN NLELGDTFNL 240 ELVQGGENPV FKMSGVHFNP MVIEEETEKE RIKKVERKVQ KEQISPASSM TMHPYFLVKM 300 TRTYLTRYLL YIPLDFTEKN GLTADLIPSM ILRNEEGSSF PVGLKTMKGG RAVIKSGWKE 360 VVQENGLKEG DVLLFQLIET GTKPVMTFKV GKLTKSKTFV CSDLDAHPVS CTMLNTCLEL 420 KRFMFHSHID PNTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026264 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10026264 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16161 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-44 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10026264 |