PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026200
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 387aa    MW: 44311.6 Da    PI: 6.875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026200genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.61.1e-44131401123
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  l+pGfrFhP+deelv++yL +k++ ++  +   + evd++++ePwdLp++++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++v+++   
  Lus10026200  13 LAPGFRFHPRDEELVCDYLFNKITFSRSLF---FIEVDLNNCEPWDLPETTRVGGKEWYFYSRRDRKYATGLRTNRATASGYWKATGKDRAVIRNevs 107
                  579*********************999544...679************9888999**************************************99898 PP

          NAM  96 .....kgelvglkktLvfykgrapkgektdWvm 123
                       +++lvg++ktLvfy+grapkg+ tdW m
  Lus10026200 108 snkrrQQQLVGMRKTLVFYQGRAPKGHTTDWGM 140
                  888776777**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-486185IPR003441NAC domain
PROSITE profilePS5100546.51313185IPR003441NAC domain
PfamPF023651.4E-2015140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSVSKIRMVE AKLAPGFRFH PRDEELVCDY LFNKITFSRS LFFIEVDLNN CEPWDLPETT  60
RVGGKEWYFY SRRDRKYATG LRTNRATASG YWKATGKDRA VIRNEVSSNK RRQQQLVGMR  120
KTLVFYQGRA PKGHTTDWGM LKATKPIGLC TSSDSKARLL ALEQLLPLII RVAKEDWVLC  180
RVFYKDKEVI NSKQSKIEIL RNNNNNNYEE EDDDYVENEY SSSSHLPPLT DSSYNNITCH  240
QQQQPLVLAS CLNDDQYEQV PCFSILSQNV LSSSSVTPQF NFSHHHDAND YNVITTATAA  300
VTDASLTLPI DHHHHVINNG HLEDHDTLSN CDKKVMKEVL NHLTKVESTS YNNYNYQLYS  360
SSLSLVEGSP ESYLSEVGIA NIWNRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-3611881171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100262000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-72NAC domain containing protein 1