PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026166
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 331aa    MW: 36931.6 Da    PI: 9.3233
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026166genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.4e-104485445
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Lus10026166 44 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTSLEQEL 85
                 5888*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-941104IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.3934387IPR004827Basic-leucine zipper domain
PfamPF001704.1E-74585IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.56E-74588No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-84690No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141442.6E-33127202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTDASARTDS GDESDEKSQR IDRGISAYVG ASDSSDRSKD KMDQKTLRRL AQNREAARKS  60
RLRKKAYVQQ LESSRLKLTS LEQELQRARQ QGIFISSSGD QTHSMGGNSA MAFDVEYARW  120
VEEQNRQINE LRAAVNSHAG DTELRIIIDG VMTHYDEVFR LKSNAAKADV FHLLSGMWKT  180
PAERCFLWLG GFRSSELLKL LMNQLEPLTE QQLAGITNLQ QSSQQAEDAL SQGMEALQQS  240
LAETLSSGSP GTTGPSGNVA NYMGQMAMAM GKLGTLEGFI RQADNLRQQT LQQMHRILTT  300
RQSARALLVI HDYFSRLRAL SSLWLARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8303900.0EU830390.1 Linum usitatissimum clone LU0008A03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513027.10.0transcription factor TGA6
RefseqXP_027354195.10.0transcription factor TGA2.2-like isoform X2
RefseqXP_027354196.10.0transcription factor TGA2.2-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLB9RG750.0B9RG75_RICCO; Transcription factor HBP-1b(C1), putative
STRINGLus100261660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-162TGACG motif-binding factor 6