PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 354aa MW: 38158.1 Da PI: 7.2645 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Lus10026121 150 FSCNFCKREFSTSQALGGHQNAH 172 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.25E-6 | 147 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-4 | 148 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.468 | 150 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEPIAKSESQ SPSNASSVSA TASSEGAIRQ KKVAAELVND LEMKEKVTQL SQSSSSSPAA 60 QPPSGTTSPR VVLDLKLSND RHPNPENKSL QLTLFNGFNN KEEEEEGDSS SHLHPQPHHH 120 HFLHNMNRVV DVEEEEEGRL IESSERSRVF SCNFCKREFS TSQALGGHQN AHKTERAIAK 180 KRQGIEIGGG IGHFPYHPYS TLSPLPFYGS SSFSRSSLSI LGLRADSFIH KPPSSYTWSS 240 PIATASLAYR SRYGAAPWPR AGPLQSHLDR LRLESLGALH NNNSTNNKVE TISLLKNFGL 300 SNNNNNNINC SPNIITIGSG SSQTPLDSPS STSGGGGIVP PAEGSELDLS LKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026121 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10026121 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 9e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10026121 |