PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 29268.8 Da PI: 9.6317 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 9.9e-11 | 19 | 120 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.........EEETTE.......EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.......rkksgr.......yvltkGWkeFvkangLkegDfvvFkl 84 ffkv +++ + +rl +p f+++hg s ++l+ + g +W++ l + r + + + W +F++ Lk g ++vF++ Lus10026067 19 FFKVILQETI-TDKRLAIPEMFVKKHGAA--LSSPVSLKLPGGTTWKIDLLIeicssssR----TsanknifWLCNETWHKFAQHYSLKHGHSLVFQY 109 6666655544.5567***********855..6667***************7767544331....1334455445569********************* PP -SSSEE..EEEEE CS B3 85 dgrsefelvvkvf 97 +g s f ++ +f Lus10026067 110 EGGSLF--TIAIF 120 997777..66666 PP | |||||||
2 | B3 | 38.9 | 1.6e-12 | 150 | 240 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.s 88 ffkv ++ +l+++++++p++f +++++ k+++++++++ + W+v+ + k +++ + + +G F+kan +++gD++ F+l + + Lus10026067 150 FFKVVISQLHLAKNNMWVPREFSKRYMMMKTSKVEVKVQV-GEEWWKVNACRYKAGNGiynVQMNGGFACFAKANSIEVGDVCFFELLSAkE 240 889999999999999***********88888877777554.557899999665555556777788*********************765423 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-16 | 12 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-17 | 13 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-12 | 17 | 121 | No hit | No description |
PROSITE profile | PS50863 | 11.053 | 18 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-8 | 19 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-4 | 19 | 123 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-15 | 145 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-15 | 146 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-10 | 150 | 240 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.953 | 150 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0029 | 150 | 255 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.71E-9 | 150 | 253 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKSKTTDCGD VFDSGKPHFF KVILQETITD KRLAIPEMFV KKHGAALSSP VSLKLPGGTT 60 WKIDLLIEIC SSSSRTSANK NIFWLCNETW HKFAQHYSLK HGHSLVFQYE GGSLFTIAIF 120 DVLKGPEIQY PESITSSSSS TNEFVSKYPF FKVVISQLHL AKNNMWVPRE FSKRYMMMKT 180 SKVEVKVQVG EEWWKVNACR YKAGNGIYNV QMNGGFACFA KANSIEVGDV CFFELLSAKE 240 GGDGLSFKVT IVRQGGKERK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026067 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10026067 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10026067 |