PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026010
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 275aa    MW: 31180.1 Da    PI: 8.1091
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.91e-2787138458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  vrYkeC+kNhA s G h+vDGCgEfmp +    ++  l+CaAC+CHRnFHR+e +
  Lus10026010  87 VRYKECMKNHAPSSGRHVVDGCGEFMPRS---DDVGDLRCAACDCHRNFHRQEID 138
                  89*************************93...35899***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2487137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1587139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-2588137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.86789136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.97E-18199270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27201270IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-27209266IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEEGDTNETT SPPAHTTVAH QQQHSSSGAR SRTYRHRSID LPHDAHFSPL DLQPNDPQEE  60
DDRRSRLLQP AADALTVQQQ QLPLIIVRYK ECMKNHAPSS GRHVVDGCGE FMPRSDDVGD  120
LRCAACDCHR NFHRQEIDNP PPLMMQPPPR RTTATTMHRF PPPPPPPVIM MTFGGGGTSM  180
GAESSSEDLD DLRRTGELLE QSRTTSCSRK RHRTKFSKEQ KEMMADFAER IGWRIDKGDE  240
SEVDMFCSRI GVKRKVFKVW MHNNKQRSGK PKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-192102651873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076140.12e-60zinc-finger homeodomain protein 6
SwissprotQ9ZPW72e-51ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A067KRE04e-59A0A067KRE0_JATCU; Uncharacterized protein
STRINGLus100260100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.18e-45homeobox protein 24