PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025973
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 1513aa    MW: 165936 Da    PI: 6.2058
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025973genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0614881511226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   + + C+ f+++G+Ck G++C+F H+
  Lus10025973 1488 GPRVCK-FYENGYCKKGASCSFWHP 1511
                   5689**.6666***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF475923.27E-19296374IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.6E-23297377IPR003121SWIB/MDM2 domain
PfamPF022011.4E-12315373IPR003121SWIB/MDM2 domain
PROSITE profilePS5136025.167439572IPR004343Plus-3 domain
SMARTSM007192.1E-42439549IPR004343Plus-3 domain
SuperFamilySSF1590422.48E-29440569IPR004343Plus-3 domain
PfamPF031265.3E-21444544IPR004343Plus-3 domain
SuperFamilySSF552774.05E-16639703IPR003169GYF domain
CDDcd000728.55E-15651708No hitNo description
PROSITE profilePS5082914.653651705IPR003169GYF domain
SMARTSM004441.9E-12652707IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.9E-16653704IPR003169GYF domain
PfamPF022135.5E-9654697IPR003169GYF domain
PROSITE profilePS5010314.28614861512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-614871511IPR000571Zinc finger, CCCH-type
SMARTSM003560.001614881512IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-414881511IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-414901510IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1513 aa     Download sequence    Send to blast
MEQQQQQQQV SRIWKGEGEQ SQRGGVFDSL LRGVGAEDMT IDQCEAIREM DDSQLIGAPV  60
AVSADVAAKV DSAATVDVRV GNAVAAVPEI STVKRRRGRP PRNQGKVVAP PPKAMEEEDV  120
CFICFDGGSL VLCDRRIGNK MCIYYGWIIA ELFFTIAFEH GIHGRSLPLQ AQVDFDDKRN  180
WEYLFKVYWV CLKEGLSLTV DELLKAKNPW NVDELPKAKS PWKVPAAVDP VSESSGELYY  240
GRDEKATSSG NSYGSLETNY SKRRKYDVEP KNLTDEKPVG TEKSSISKVA PLPEGMQWAT  300
KELIEFVAHV RNGDTSFLSQ FDVQALLLDY IKRNNLSDSR RKSQILCDTR LINLFGKTRV  360
GHIEMLKILE NHFLVKENPP CDESVRVDIA AAAAEGSCTH PSVGIGNGIV VNNDRRRKTR  420
KRMDEKVNQI NPNPDEYAAI DVHNINLLYL KRSSMENLMI DADKFHEKVV GSFVRIRIPC  480
GDHRQDVHRL VQVVGTGKAA QSYKLGIRIT DIMLQIMNLD KKEVVSIDGI SDQDFSEEEC  540
KRLRLSVGSG LIKLMKVGAI QEKAKALHSV KVTDFLEAEI AQLTHLRDRA NEERQRRLLE  600
VPIVHSDPNI GFGSSSHGQN SHAVVSEPIS AAAPVMHYPP TTSVVPLNDE ERLWHYRDPF  660
GTVQGPFPMM QLRRWSTSGL FPLDLRVWMV NGKEEESILL TDALLGLFRR EPLLPANNHM  720
PPQEVTTDCS DKDKMWNRVS SQDTSTNQMP PQEVITNCGD RGKNLNLRQD TSTNHMPPQE  780
VISDYSDKDK KWNPASSQDT STNNIPPQEV ITDCSDKDKK WNSLSSQDTS TNHMDKNKDD  840
QNGPSERNDI SSMDVGNDEV RSNELGSRSS RLTMLVDLVI GSNELDQKSE QPCELSKNDK  900
SGVSQSQICD SVASPSASAK ERDGDAETLP VAQVVEEENR STSVNDVKRS PKEQTVVEEG  960
DEKKGKSEGC ASQSSGQSWH STPMNISYGW DLNSTFPSMV NSNGTVKNEQ EVDFSEIGTS  1020
LPKQSNEDSK GPSVGESKHS VSCNVPIIDA GPSWSTTSSL VAGVRLPDVA AEWTRYSSPA  1080
KPSVEDWGSN LVSASSLRPP NGSSDHGTIP TSGAGELRHT APSIDAGGWQ AMVSEPNEFS  1140
LVDESVSDLL AEVEAMESLG GLPSPTSKLS CVGDLMHVSD NDCFSPVEDF SPAPVHGRSD  1200
ALSSTGDIQM PGRISVAEEQ LGLSIMPSHP IVPRDSLEKT QKPPQLTVTE PFHISLMLSQ  1260
PLVTSKPQSA AVPTLQHRQS QAEGSFGITR TDVRDSQKSS SNGHSSNEVE RERPHSVKSN  1320
RWEGSSETQN HNQSSSRQPK LELDIHLPFG SNTSRHQVEA KPDIQFHAPA SVDLRLGNSR  1380
GQRSILGIAP GIAAQGNTST HLGSTGHSSV KKQASQYPAA PAAGIPSLLG SPRHGGDKHS  1440
GSREHRSHHQ SSRDLGYGRE RSTWNGSSRQ SSHGGHGGGG SFKGAPKGPR VCKFYENGYC  1500
KKGASCSFWH PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100259730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-144DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding