PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025707
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 350aa    MW: 37519.1 Da    PI: 8.1088
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025707genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-394197662
       zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +kcprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rk+kk +
  Lus10025707 41 IKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKSKKLK 97
                 79***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-264195IPR003851Zinc finger, Dof-type
PfamPF027013.0E-334195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3574195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSGIHLQQQQ QQNEKEVKGN KAASSSSSTA AAAGDEGVVI IKCPRCDSPN TKFCYYNNYS  60
LSQPRHFCKT CRRYWTKGGA LRNVPVGGGC RKSKKLKSST SYSSSASATS AAAAAYASSS  120
SSDLSGFKFF SPPPTSTMDF NLKGLSLMSP PGPSTYNHHN HHPFGMDLSV SSLEPPYGMG  180
GGSMNVNTSL ASSIESLSCM NQDLHWKLQQ QRLGLLKEDG TGGGVVVEAE KAPLQPILFR  240
ELNTTSRLQQ HYPQQARAGG GGGDHESSSA AATEWFFGNS SYVQQVTSAA GDHHQAAAST  300
PPSNNNNTTV TNANQIQQQQ HDHHDQTETN WNVSGQQVHA WGDLHPYNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025707
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330035e-36AC133003.3 Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence.
GenBankAP0149595e-36AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126115e-36CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Q3BKY91e-71A0A1Q3BKY9_CEPFO; Zf-Dof domain-containing protein
STRINGLus100257070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.18e-56Dof family protein