PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10025690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34119.7 Da PI: 7.9419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.7e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd+elv++yL +k++++++++ +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + Lus10025690 7 LPPGFRFHPTDDELVMHYLVRKCASQPISV-PIIAEIDLYKYDPWDLPGLALYGEKEWYFFSPRDRKYPNGTRPNRAAGTGYWKATGADKPIGL--PR 101 79****************************.88***************6555679*************************************99..77 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkgekt+W+mheyrl Lus10025690 102 PVGIKKALVFYAGKAPKGEKTNWIMHEYRL 131 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.413 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSPALDLPPG FRFHPTDDEL VMHYLVRKCA SQPISVPIIA EIDLYKYDPW DLPGLALYGE 60 KEWYFFSPRD RKYPNGTRPN RAAGTGYWKA TGADKPIGLP RPVGIKKALV FYAGKAPKGE 120 KTNWIMHEYR LADVDRSARK KNSLRLDDWV LCRIYNKKGS IEKKSAPVAV SRRAHSTDSI 180 EEKKPSLLMS TAPVPQLPAT VSGGYQPTIN SYNNDYVCFE SSDSVPRMNT DSSCSEHVVS 240 PEFTTSEVQS EANWGMNNAG GGFDLGFNYM DAAMEREFAS QFQGGAINQM SPLQDMFMYL 300 QKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-80 | 5 | 163 | 13 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10025690 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604672.1 | 1e-155 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-142 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | R4NER1 | 1e-155 | R4NER1_JATCU; NAC transcription factor 025 | ||||
STRING | Lus10025690 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-145 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10025690 |