PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025632
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 437aa    MW: 47259 Da    PI: 9.324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025632genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034182204223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   Cp Cg+ F   ++L+ H+ + H
  Lus10025632 182 ACPECGQIFMKAESLELHQAVkH 204
                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.058181209IPR007087Zinc finger, C2H2
PROSITE patternPS000280181204IPR007087Zinc finger, C2H2
SuperFamilySSF563992.11E-16206434No hitNo description
Gene3DG3DSA:3.90.228.101.3E-16208433IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAIWKTPKKP TTETHHKNNK NKRQSSQKPE NKPPSSSSST WKGIFSCKDL QTHNQILNQL  60
DEPVTPTSKK SKKLKCSGSL CSNTKVMQYR PSAELIGTST NTTSGTSTIM QTGSSSRSIR  120
PPVSSEVMVS NGGRRGVVSG SSYSTFKGMP FSRFSGCYEC RMVVDPVLGG FGGKDLRNSI  180
CACPECGQIF MKAESLELHQ AVKHAVSELG AEDTSKNIVE IIFQSSWLKM ESPICKIDRI  240
LKVHNTQTTI TKFEEYRDSI KSKATNLFPK KHPRCIADGN ELLRFHSTTF ACSLGLNGSS  300
NLCSGRCNVC NIIKNGFTIG TGGGVGILTT ATSGKAHDKA VGPTVVSVEK AEKRAMLVCR  360
VIAGRVMKKN GLTMGVIGNS QVSRDGEEEE GGKEGERKEY DSVAGGDVGV YSNLDELYVF  420
NPTAILPCFV VIYCGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025632
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366983.11e-159PREDICTED: uncharacterized protein LOC103956687
TrEMBLA0A498HYJ41e-157A0A498HYJ4_MALDO; Uncharacterized protein
STRINGLus100256320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.17e-72C2H2-like zinc finger protein