PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10025582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 169aa MW: 18401.3 Da PI: 9.7873 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 60 | 104 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l d+ +++ ++ + ++Ia+ ++ +t ++ +r Lus10025582 60 DWTPEEQSILEDGLAKYASEsnigRYSKIAKQLP-DKTVRDVALRC 104 7*********************************.99999998885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-7 | 53 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-5 | 57 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-6 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 60 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.36E-8 | 61 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MANPSGKQLQ NRNQDAPASN NNNNNDSSSS LNGNNPANGY LESSNPTVAA LKHNPGISND 60 WTPEEQSILE DGLAKYASES NIGRYSKIAK QLPDKTVRDV ALRCRWMSKK ESSKKRKEEN 120 VRRGKDKKEK LTDVSTKPSS TVVRSNAPAY ANTVAPIDYD DGISFKGC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 128 | RRGKDKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10025582 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020532722.1 | 4e-58 | uncharacterized protein LOC105628422 isoform X2 | ||||
Refseq | XP_021661238.1 | 1e-57 | uncharacterized protein LOC110650539 | ||||
TrEMBL | A0A067LI47 | 1e-55 | A0A067LI47_JATCU; Uncharacterized protein | ||||
STRING | Lus10025582 | 1e-120 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3657 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10025582 |