PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025533
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 808aa    MW: 90817.4 Da    PI: 7.5807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025533genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.5e-157228051498
                  T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  ++  +p kf+++h        +   ++le    ++W+v+++      ++ +++GW++Fvk n Lk +D++vFkl+++  e +++v+++r
  Lus10025533 722 CQAHIPSKFTKQHafmRD--VK--AVKLE-VGDKVWSVRICLGPDNMSVKIAAGWSRFVKKNSLKLRDVCVFKLMEKsPEVRMKVTIIR 805
                  6678*********85322..23..34444.466*******99999999**************************988799999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.752939IPR002885Pentatricopeptide repeat
PfamPF015350.441834IPR002885Pentatricopeptide repeat
PfamPF130419.7E-104087IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.7344175IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-54477IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.5876110IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-579111IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.762111145IPR002885Pentatricopeptide repeat
PfamPF130411.5E-7113158IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-7114145IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.393146186IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.525187221IPR002885Pentatricopeptide repeat
PfamPF015350.057196219IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.7E-5197223IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.244222256IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-8225258IPR002885Pentatricopeptide repeat
PfamPF130411.5E-13229270IPR002885Pentatricopeptide repeat
SuperFamilySSF484524.17E-5257372IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137513.625257291IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-12258378IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007565.2E-10259293IPR002885Pentatricopeptide repeat
PfamPF130412.3E-17291340IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.463292326IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-9294328IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.332327361IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-9329360IPR002885Pentatricopeptide repeat
PfamPF128547.3E-9377406IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.507379413IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-8381414IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.34414448IPR002885Pentatricopeptide repeat
PfamPF130418.7E-13414461IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-7417450IPR002885Pentatricopeptide repeat
SuperFamilySSF819019.94E-7417554No hitNo description
Gene3DG3DSA:1.25.40.101.3E-12417479IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.038449483IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.9E-7451485IPR002885Pentatricopeptide repeat
PfamPF128549.7E-10480512IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.156484518IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-8486520IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-12517585IPR011990Tetratricopeptide-like helical domain
PfamPF130411.8E-17518566IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.987519553IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-11521554IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.523554588IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-5556584IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-12620650IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.265622652IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.8E-5625649IPR002885Pentatricopeptide repeat
PfamPF015351.2E-4626649IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.251659693IPR002885Pentatricopeptide repeat
PfamPF015350.082662691IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.36694728IPR002885Pentatricopeptide repeat
SMARTSM010190.0013714807IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-15715805IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-13720803IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-12722805IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814726807IPR003340B3 DNA binding domain
CDDcd100171.49E-13726805No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MSGLGYAMDG FTLGCFACSL CKAGKWREAL KLIEDEEFKP DTVLFTNMIS GLCEASLFDV  60
AMDFLTRMRV YSCIPNVLTY RILLCGCLRK KQLGRCKRIL NMMITEGCYP SPAIFNSLVN  120
AYCKLRDYAY AYKLIKKMME CGCQPGYIVY NIFIGGVCGN QELPEASALE LAEKAYREML  180
DAGVTLNKVN VSNLAWCLCG AGKFEEAYCL ISEMMSKGFI PDTSTYSQVI TCLCNSTKVE  240
KAFLLFQEMR KNGILPDVYT YTQLIDSFCK VGLLKQARRW FDEMEENGCA PNVVTYTALI  300
HAYLKARKVS DANEIFELML SKGSVPNVVT YTALIDGYCK AREIEKACKI YARMKQENVE  360
NSEVDMYFGV VDTESEEPNH FTYGALVDGL CKAHKVKEAH ELLEAMSASG CQPNHIIYDA  420
LLDGCCKVGK LDEAQEVFTQ MIEHGYNPNV YSYSSLIDRL FKDKRLDLAL KVLSKMLENS  480
CAPNVVIYTE MIDGLCKVGK TDEAYKLMVM MEEKKCHPNV VTYTAMIDGF GKAGRLDKCL  540
QLFQKMASKG CAPNFVTYKV LINHCCAASL LDEALKLLEE MKETHWPKHV AGYRKVIEGF  600
NREFIASLDL LDEFSEKEAV PVSPIYRVLI DSFAKAGRLE KALELYKEVS SFLAPSAANR  660
NMYISLIEGL ALANRVDMAF DLHVDMTLKG IIPEVGTVVH LIKGLLRLNR WDQILQLSDG  720
ICQAHIPSKF TKQHAFMRDV KAVKLEVGDK VWSVRICLGP DNMSVKIAAG WSRFVKKNSL  780
KLRDVCVFKL MEKSPEVRMK VTIIRGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9d_A1e-11557615452pentatricopeptide repeat protein dPPR-U8A2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026357.10.0PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial
SwissprotQ9M9X90.0PPR18_ARATH; Pentatricopeptide repeat-containing protein At1g06710, mitochondrial
TrEMBLA0A2K1ZTA70.0A0A2K1ZTA7_POPTR; Uncharacterized protein
TrEMBLA0A385JI990.0A0A385JI99_POPTO; Tetratricopeptide repeat-like superfamily protein
STRINGLus100255330.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.22e-65pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Haïli N, et al.
    The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria.
    Nucleic Acids Res., 2013. 41(13): p. 6650-63
    [PMID:23658225]