PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025505
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 215aa    MW: 24789 Da    PI: 10.8816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025505genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-12100182187
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  ffk    s  l+++ +++p +f+++h        ++  ++le    ++ +v+   +  ++  + l++GW++F+kan +k gD+++Fk++ +
  Lus10025505 100 FFKLIFDSTILEKK-VCIPLTFTRQHsflR--DVKQ--VKLEV-GDKVRSVRT--WLDRDIyVRLGGGWRKFAKANSIKLGDVCMFKMITT 182
                  77878778888877.***********9543..3454..55554.347777777..444444388***********************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1397181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.74299192IPR003340B3 DNA binding domain
CDDcd100179.27E-1199180No hitNo description
Gene3DG3DSA:2.40.330.101.8E-1299183IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-9100182IPR003340B3 DNA binding domain
SMARTSM010192.8E-7100192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVEISIKHPN TRWTNKSSSL ISHRISKLRP CLVTSLLVVF HFLNLPPTSL ITSPQIHKEV  60
DFQQLFFHSP RRRRKKKDKL RNNGCASSSQ ARRGEEVIRF FKLIFDSTIL EKKVCIPLTF  120
TRQHSFLRDV KQVKLEVGDK VRSVRTWLDR DIYVRLGGGW RKFAKANSIK LGDVCMFKMI  180
TTSPDVRMRS PSLEVSEDVH SSSSCVLCLN LLEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076RRRRKKK
27077RRRRKKKD
37277RRKKKD
47378RKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025505
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100255051e-155(Linum usitatissimum)