PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10025471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 158aa MW: 17491.1 Da PI: 7.3825 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lus10025471 44 FSCNYCERKFYSSQALGGHQNAH 66 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 42 | 71 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MDHDDECHYN QVNLNLILEP SSSSSTTSSP RGGPAAVDHL PRVFSCNYCE RKFYSSQALG 60 GHQNAHKLER TLAKKSRDIL GGSLSRRVNG GGGWSHRMHD SSSSSGHGGI RVGVKPERRG 120 QYRNEYGDVA EDRGSWYVES DHHVQEEFSH LDLSLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10025471 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474223.1 | 3e-28 | PREDICTED: zinc finger protein 2 | ||||
Refseq | XP_012474225.1 | 3e-28 | PREDICTED: zinc finger protein 2 | ||||
TrEMBL | A0A0D2MW77 | 6e-27 | A0A0D2MW77_GOSRA; Uncharacterized protein | ||||
STRING | Lus10025471 | 1e-112 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9619 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-24 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10025471 |