PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025454
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 1774aa    MW: 200205 Da    PI: 4.9122
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025454genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-183186257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                  kR+  t+ qle+Le+++  + yp++++r eLAkklgLt+rq ++WF+ rR k+++
  Lus10025454 31 PKRQMKTPFQLETLEKAYSVETYPTEATRIELAKKLGLTDRQLQMWFCHRRLKDRR 86
                 69****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-191687IPR009057Homeodomain-like
SuperFamilySSF466898.98E-182189IPR009057Homeodomain-like
PROSITE profilePS5007117.1512787IPR001356Homeobox domain
SMARTSM003893.5E-192991IPR001356Homeobox domain
PfamPF000463.1E-163186IPR001356Homeobox domain
CDDcd000864.40E-143286No hitNo description
SMARTSM005713.0E-22539598IPR018501DDT domain
PROSITE profilePS5082716.1539598IPR018501DDT domain
PfamPF027911.9E-17541595IPR018501DDT domain
PfamPF050661.9E-13718785IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156128.1E-4943968IPR028942WHIM1 domain
PfamPF156135.9E-1310981170IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1774 aa     Download sequence    Send to blast
MDSNSDGEDY QNRKPNKGVA SGSGGGGDGK PKRQMKTPFQ LETLEKAYSV ETYPTEATRI  60
ELAKKLGLTD RQLQMWFCHR RLKDRREEKK EEKKVEKKEE KIPAKKPSRK ALPMPESPLE  120
DVKAEVPDPA SDYGSGSGSG SSPYTDPRRM PVDDVPMSRG YKEPPQQSAI LVRAIACVEA  180
QLGEPLREDG PILGIEFDAL PPDAFGAPIA AVVEQQKRYS YDEKIVQRRE GKSKKASGRA  240
LHEYQFLQDQ SSRRPDTYGQ VTQHSFHDTP ADTSRRRTST SVRGDERLPR VHGIQTPASR  300
VRLLSAHEGK SHLLPSPQRD DNYLLRAQPY PQSVFHDANV FHGEADFMTQ KKPKIKNEEA  360
RLREEAQESR TRKEIEKQDL LRRRNEERMR KEMERQDRER KKEEERLIRE RQRDEEKSLR  420
EQKRELERRE RMLQKEYIRA EKQKQKDEQR KEREEVRRKA AIEKATARRI AKESLDLIED  480
EQLELMELAA ANKGLSSIVQ LDYNTLQTLD AFRDSLCTFP SESILLKKPF SFRPWVDSED  540
NVGNLLMIWR FCITFADVLG LWSFTLDEFI QALHDYDSRL LGEIHISLLK LIIKDIEDGG  600
RAPTGLGTNQ YSVANPEGGH PQIVEGAYMW GFDICKWQQL LNPLSWPEIL RELALSAGFG  660
PQLRDKNAAW RHSNDEANRY QETVSNLRNG LAAEKAFALM REKGLLNPRK SRHRLTPGTV  720
KFAAFHVLSL EGSEGLTLIE LADKIQKSGL RDLSTSRTPE ASISVALTRD QKLFERVAPS  780
TYCVRDPYRK DPADGEAILA EARKKMHVFA NGFLEEEDAD EVADDVERDD DSEAEADDDP  840
EVDDLSTPLH ADKIVGQANG VHTPFGNDND DEKENGPTEI ENDDPHIWSS LIVKSESEND  900
LSRFPENGAR ETSTPGTIDQ FADRNPLVGN AKEENVEIDE SKFGESWVQG LAEGEYSHLS  960
VEERLDALFK LVGIANEGSI IRSVLEDRLE AATALKKQMW AEAQSEKSHL RDDVIQILEV  1020
PSGNPSPSHQ ADDFKDACRN IIEEQKLLLA SENVQNGNFH DDRNAAVQDL QLGYSSKRFR  1080
SQLKAYTAHV AEETYIYRSL PLGQDRRRNR YWLFVASASR SDPCSGRIFV ELQNGTWRVI  1140
DSEKEFDALL SSLDSRGIRE SHLGLMLKKI EMSFKDTVRK SLQSSKSMED EVSRRDSSPN  1200
CSAGTESPSS LVCGTNSDLH DVFSLFRIEI GRNEREKRGA LRRYQDLQMW IWKESLSPTA  1260
SCAMKFGKKR SRQLLDACDS CLDSYAFEDC HCRFCHQTFG GSDFNFAEHE DLCSKRSNPY  1320
SMDARGSNSC LPLGINLLKA LLASMEAFVP AEALESFWTE SHRKSWSRRL AALSSIEELL  1380
QMLTVFESAI KPDFLSPNYE STKELLGITA LNEKSDLASV RVLPWIPRTM SAVALRLFEL  1440
DASIIYVKQE KDMPSDDKLD TLVMKQHRAY SLIEQENYKE EVAVNPRSKS NVGKRRRVNS  1500
DLGRVSKKQR RRTPTHRPPS QTSNRKSQAA NNQRQGIVAA SRLEVNIQEP SRGPRTVRKR  1560
RPESVNAGGE QLIGHATERM PPPKGRFNEE SYETRRMQVD ESEDSSSSSD SGSSSDEDAA  1620
APVEESGESD EDAAALIEES DDDAAEEEGY EQAAGWNRGL DAAGKSNSNG WRENSVEGSD  1680
EEDQEGASSD AAASGDENRN GVEDEEMVEE EDSGNEEMSD ASGEEGKDDD KVARNKNDVR  1740
DSDDSGEDDK VARNDDAGDS DDSGESDEYS SHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRLKDRRE
214931497KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509429.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLB9RB950.0B9RB95_RICCO; Homeobox protein, putative
STRINGLus100254540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1