PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025340
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 398aa    MW: 42188.6 Da    PI: 8.8754
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025340genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.21.8e-3880139362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+++k+s
  Lus10025340  80 EPALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSNKRS 139
                  6789**************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3163128IPR003851Zinc finger, Dof-type
PfamPF027015.4E-3282137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.29283137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVYSSIPAYL DPANWQQPQI HPQSGGDLNI TGNGSLHQHQ HFISHAAPPP PPPPPPPTTG  60
SIRPGSMADR ARMANVPMPE PALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG  120
GALRNVPVGG GCRRSNKRSS SKGGGGSGAS SSKSPVSGGG GNNYTSSCNT SSSGDHLFGM  180
GDGPPLRFMA PLQYHYGLSE FGGGDHHHHH SNANNSHLYG GVLNSGLGGD FQVGGGAAGS  240
VMSGMDMWRL QKQQMQMGLM GAGLMDSSAS SSSSSGAIMY PFESGEMAAG WKSSLGLTNC  300
SMITTQMAAV KMEEMSQQRQ QQYRNQQQES AGSLARQLLM GINSQQNNNN NNNNMNGVIN  360
HHEGYNTSWG INAATGGGWT TADLSSFSSS STSNNQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RRSNKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289461.12e-71dof zinc finger protein DOF2.4
TrEMBLA0A061ET141e-68A0A061ET14_THECC; DNA binding with one finger 2.4, putative
STRINGLus100253400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-43DNA binding with one finger 2.4