PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025216

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 334aa MW: 37249.8 Da PI: 6.2843

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025216	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	65.7	7.5e-21	132	194	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.EEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.vveitYegeHnhe 59 +dDg++WrKYGqK++ sefpr+YYrCt++ +C+++k+v+ ++ pk + +tY ++H+++ Lus10025216 132 VDDGHQWRKYGQKTILRSEFPRHYYRCTHKndqKCKATKQVQMVQSHPKpMYRTTYYSHHTCT 194 59*************************99999****99988764889******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-22	125	196	IPR003657	WRKY domain
PROSITE profile	PS50811	17.982	127	196	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-21	130	196	IPR003657	WRKY domain
SMART	SM00774	4.9E-31	132	195	IPR003657	WRKY domain
Pfam	PF03106	1.1E-22	133	193	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MEIISPAPLN RKNNNAIHEI LRGRDFTCQL RQLLLSTYKS GGSSSSAAEY LVAKILTSFT 60 HTLSILNSNN ADYSSADEVS QCLDAPKSEI SSGDSTSYDK ISSSTMDDRR GCYKRRKTTS 120 SDSWVNEAET LVDDGHQWRK YGQKTILRSE FPRHYYRCTH KNDQKCKATK QVQMVQSHPK 180 PMYRTTYYSH HTCTNPMNHF FLDPPSNDVR LISFRNNNNT AGTSSIKGGQ HDSMMFSSTP 240 FLASFSTSSS PPSTSETVFK QESSLVDDAN VVSDVGRQGG GGGGGQTENQ SDVDDDDEDH 300 DDYYQSESGY MRMLMDPPTV DQGWFSDLKS RSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	7e-15	132	193	8	68	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025216

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021290890.1	6e-59	probable WRKY transcription factor 70
TrEMBL	A0A061EIE6	2e-56	A0A061EIE6_THECC; WRKY DNA-binding protein 70, putative isoform 1
STRING	Lus10025216	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	8e-33	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Lus10025216