PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10025133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35951.6 Da PI: 6.126 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.8 | 3.5e-21 | 129 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.EEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.vveitYegeHnhe 59 +dDg++WrKYGqK++ +s+fpr+YYrCt++ +C+++k+v+ ++ pk + +tY ++H+++ Lus10025133 129 VDDGHQWRKYGQKTILKSDFPRHYYRCTHKndqKCEATKQVQMIQSHPKpMYRTTYYSRHTCT 191 59***************************99999********99888764889********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-22 | 123 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.119 | 124 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-21 | 126 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-31 | 129 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-23 | 130 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEIIHPTPLN RKEAIHEILR GRDFTCQLRK LLLSTYESGG SSSSAEDLVA KILKSFTHTL 60 SILNSNNANY SEVSQCLDAP KSEISSGDST SCDKIISSST KDDRRGCSYK RRKTITLSES 120 WANESETLVD DGHQWRKYGQ KTILKSDFPR HYYRCTHKND QKCEATKQVQ MIQSHPKPMY 180 RTTYYSRHTC TNPMNYFFLD PPPSNDDVHL ISFSNNNNTA GTSSIKGEQH DSMMISSTPF 240 LASFPTSSPP SSSTSAAAAA EIVPLKQESS VDVGRQGGGS TQTENQSDVD DDDDYYQSET 300 SYMRMLMDPP TVDHGWFSEL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-15 | 129 | 190 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10025133 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021684239.1 | 7e-60 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A061EIE6 | 5e-56 | A0A061EIE6_THECC; WRKY DNA-binding protein 70, putative isoform 1 | ||||
STRING | Lus10025133 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 9e-30 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Lus10025133 |