PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025078
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 523aa    MW: 58586.7 Da    PI: 4.5938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025078genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.6e-20191692128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                  p GfrF Ptd+el+ +yL + v++   ++e + i++ di++ ePw+L +          ++ e+++yfF+  +k+  t+k++ r++    g W+   +
  Lus10025078  19 PSGFRFLPTDDELLRHYLYNYVKHIYGPEEFFpIRHRDIHSDEPWELWQsfqiigdnGGSGPENDVYFFADLKKTRYTDKNHGRKIGkgGGHWHGEDR 116
                  78*********************9985554445**************7535555543222255688****9999988988888865534789**9999 PP

          NAM  89 dkevlsk.......kgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                   k+++ +       +  +         vglkk + +  + + k+e+ +W++hey++
  Lus10025078 117 GKKLTLEidypgggE--EssppvaanwVGLKKRFSYR-NVTLKSEQQKWILHEYSI 169
                  999998888887541..2466777777********98.56666699********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-2117186IPR003441NAC domain
PROSITE profilePS5100525.64618188IPR003441NAC domain
PfamPF023652.1E-1619169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAVIEPDIRR PGPETNLRPS GFRFLPTDDE LLRHYLYNYV KHIYGPEEFF PIRHRDIHSD  60
EPWELWQSFQ IIGDNGGSGP ENDVYFFADL KKTRYTDKNH GRKIGKGGGH WHGEDRGKKL  120
TLEIDYPGGG EESSPPVAAN WVGLKKRFSY RNVTLKSEQQ KWILHEYSIS NDGGSSYFSE  180
VVCRLRNNKS PTARQISAAF VRVKRPIEEY INVRAEKSDC RSKKRVRYST PLTSQHFAEE  240
VVSSNPSSVE EVLNSVFSSN FDPIVHLEEN VTCLNPSSNQ ANYARTSYNS AFSSLGFGLV  300
SQLPPLVGNV TCLNPSSNQL ECDQCNPYYI KNNAPMIEAS CSYQDTRIST YQLDPLTKFS  360
STFEQGSTSN VATESTSEFG SMFEQGSTSN AATASTSEFY TMYGPITCDE ICKGVYRDPT  420
PLGLSAFEIQ SLLYPSSDSV QCNDDDHQTG GIESAVIDGG RDQQQQIVQI PEDKQQPPCE  480
VISDEIVLKD DDASWFDVID FDCDASWLNV SQYDIDPPTG FL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025078
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100250780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.37e-14NAC family protein