PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025071
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-X1
Protein Properties Length: 1100aa    MW: 118765 Da    PI: 8.0795
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025071genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.52.1e-06360377118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H C + CH+GpC++C
  Lus10025071 360 CGNHECDEVCHPGPCGSC 377
                  ****************** PP
2zf-NF-X123.21.4e-07418435118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H C+ lCH G+CppC
  Lus10025071 418 CGIHNCEDLCHSGDCPPC 435
                  ****************** PP
3zf-NF-X118.64e-06514532119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+H+C++lCH G CppC 
  Lus10025071 514 CGQHSCESLCHSGHCPPCL 532
                  ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.62E-7120191No hitNo description
PROSITE profilePS500168.564126187IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.376129185IPR001841Zinc finger, RING-type
PROSITE patternPS013590129184IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.52E-5218279No hitNo description
SMARTSM004380.39241259IPR000967Zinc finger, NF-X1-type
PfamPF014221.8243258IPR000967Zinc finger, NF-X1-type
CDDcd060085.39E-11286334No hitNo description
PfamPF014220.059296313IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012296315IPR000967Zinc finger, NF-X1-type
CDDcd060082.56E-9350393No hitNo description
PfamPF014227.5E-5360377IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7E-4360379IPR000967Zinc finger, NF-X1-type
CDDcd060088.30E-14408456No hitNo description
PfamPF014228.4E-7418435IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-5418437IPR000967Zinc finger, NF-X1-type
PfamPF0142218476487IPR000967Zinc finger, NF-X1-type
SMARTSM00438270476510IPR000967Zinc finger, NF-X1-type
CDDcd060083.13E-9504556No hitNo description
PfamPF014229.8E-5514531IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4514533IPR000967Zinc finger, NF-X1-type
CDDcd060083.17E-5561609No hitNo description
SMARTSM004380.91571589IPR000967Zinc finger, NF-X1-type
PfamPF0142212577588IPR000967Zinc finger, NF-X1-type
PfamPF014220.034624639IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11624655IPR000967Zinc finger, NF-X1-type
CDDcd060081.55E-4653702No hitNo description
PfamPF014223.1657683IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011664685IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.3E-4902952IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1100 aa     Download sequence    Send to blast
MSSQPRGDRR DRSRSSSQTA QQRWIPRGSA PSSVSVNNNI PPATFNPSNV DGRGEQSNAN  60
PNSGPREARP KGAGNASRSY VAGRPVNNHR RDKQREKGET HAVKESVDPN LPQLVQEIRE  120
KLAKGTVECM ICYDMVRRSA PIWSCSSCYS IFHLHCIKKW VRAPTSIDMS ADKHQGFNWR  180
CPGCQYVQLT PLKEISYLCF CGKRTDPPSD LYLTPHSCGE PCGKPLERHL PGSLETKEDS  240
CPHNCVLQCH PGPCPPCKSF APPCLCPCGK KTITTRCSDR QSVLTCGQQC DKLLDCQRHR  300
CGRMCHVGPC DPCEILVTAS CFCKKKQEVV YCGDMSVKGE VNVKDGVFSC NSSCGKLLAC  360
GNHECDEVCH PGPCGSCALM PGRVKSCYCG KTSLQKERKS CLDPIPNCSQ VCSKLLPCGI  420
HNCEDLCHSG DCPPCMVSVS QKCQCGSTSR TVACYQTSTE SEKFKCDKPC GRKKNCGRHR  480
CSERCCPLSN PNPVRSEDWD PHFCQMACGK KLRCGQHSCE SLCHSGHCPP CLETIFSDLT  540
CACGRTSIPP PLPCGTPAPS CQLPCSVPQP CGHLASHSCH YGDCPPCSVP VAKECVGGHV  600
VLKNIPCGSK DIRCNKLCGK TRQCGLHACG RTCHPAPCDS SGSTSAGAAR VSCGQTCGAP  660
RRDCRHTCAA LCHPSSPCPD VRCQFPVTIS CSCGRITASV PCDAGGTNAG YSADTVFDAS  720
IAHKLPAPLQ PVESTGSRIP LGQRKLTCDE ECAKSERKRV LADAFDISTP NFEALHFGEN  780
SQVTELIADL YRRDPKWVLA VEERCKYLVL GKSKGTVGGL KVHVFCPMMK DKRDAVRLIA  840
ERWKLSINVA GWEPKRFVVL HATPKSRPPS RVICVKGTTT NPHSPTFDPL VDMDPRLVVS  900
FLDLPREADV SSLVLRFGGE CELIWLNDKN ALAVFSDPAR AATALRRLDH ASAYYGVAVV  960
LQNTGPGGAW GAMGTPAREG GGVSATLKGA SAWKKAVTQV DSWGGEEQRH VSSMDAQSTP  1020
WKQKEAAVNA SVNRWSVLDL ESSSSNGASL IRSNNQGGSH SGSGAGASLL PRDAVVPEGE  1080
SSEVVDDWEK AYDMENDVQ*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025071
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614783.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2C9VN510.0A0A2C9VN51_MANES; Uncharacterized protein
STRINGLus100250710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1