PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025044
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 443aa    MW: 50028.2 Da    PI: 6.0736
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.81.4e-19246305155
      G2-like   1 kprlrWtpeLHerFveaveqLGGs..ekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                  k+r++Wt++L ++Fv+a++ LG s  ++ +P +ile+   m+v+g+t+e+v+SHLQkYR+
  Lus10025044 246 KKRMVWTQDLRNKFVDAINFLGTSsnNNIVPTKILECmlkMGVEGITRENVASHLQKYRM 305
                  78*******************97622578*****99733369*****************8 PP
2Response_reg69.71.2e-23451531109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+++ + +lrq+l++  + +v++++ +++al++l++ +  +D+++ D+ mp++dGl+llk  ++e  +lp+++v++ +++ ++ e +  +a 
   Lus10025044  45 VLLVDDDETCLLILRQMLQRCSF-RVTTCQRAKDALAMLRDDKsqFDIVVSDVHMPEIDGLKLLKIVAFEM-DLPVVLVSSDDDQRLVMEGILGDAC 139
                   89*********************.***************777777********************998866.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++++ +
   Lus10025044 140 DYLIKPITMNNIKT 153
                   *******9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-3542191No hitNo description
SuperFamilySSF521725.69E-3142167IPR011006CheY-like superfamily
SMARTSM004482.4E-2343155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.55944159IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1945153IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.07E-2246158No hitNo description
Gene3DG3DSA:1.10.10.602.5E-20243309IPR009057Homeodomain-like
SuperFamilySSF466891.08E-13243308IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17246306IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
METAQTTTPV VHVGENTKNK SIDYNEDSSY HHRLLVSEYP AGLKVLLVDD DETCLLILRQ  60
MLQRCSFRVT TCQRAKDALA MLRDDKSQFD IVVSDVHMPE IDGLKLLKIV AFEMDLPVVL  120
VSSDDDQRLV MEGILGDACD YLIKPITMNN IKTIWQHVVR RRRSKAPMDN SQPLPRLPHP  180
LMNNNSKAEL SDKCTVDHNH NNGAAASSDS TISILKKSND DEQLGREDGG SGSNDDGNSQ  240
LTTKRKKRMV WTQDLRNKFV DAINFLGTSS NNNIVPTKIL ECMLKMGVEG ITRENVASHL  300
QKYRMQRRRQ QEQQHESLLL HSSSSPDFHH QFHPPFTVGS WGSSAFAPTA INMTAIDEDA  360
LVDHHHQINN NINVSHSLPI NIRAAGEMLG ENYNSHPRVL YDPYFNLQSQ LDYQMGIFHE  420
NMVNNDALGS ADDMENPWQF DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l5y_A3e-13451636123C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD
1l5y_B3e-13451636123C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD
1l5z_A3e-13451636123C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100250440.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-54response regulator 2