PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10024908

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 270aa MW: 30767.5 Da PI: 6.2279

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10024908	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100	3.4e-31	17	94	53	129
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +ewyfFs rd+kyatg r+nrat sgyWkatgkd++v++ ++e+vg++ktLvfy++rap+g kt W+mhe+rle Lus10024908 17 LNATEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVVEPnTKEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 94 4668***********************************9967788*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.077	1	112	IPR003441	NAC domain
SuperFamily	SSF101941	1.12E-37	14	112	IPR003441	NAC domain
Pfam	PF02365	7.3E-15	21	93	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNLYILLLFG DAEVAKLNAT EWYFFSFRDR KYATGFRTNR ATISGYWKAT GKDRTVVEPN 60 TKEVVGMRKT LVFYRNRAPN GIKTGWIMHE FRLETPHLPP KEDWVLCRVF HKSKASSDDY 120 NNLSPPIYYN YNPTPLVEPN NQSPPINTGH QLALPATGGY DHHHQQQQQH PPAAGSLLTL 180 LLQDREKLLM MNHKEDSNHD DHKSSNPQSE IIVSSKPSSN IDQVDQFAGF LWDEMNLDET 240 CSLGDGVVVG SDFDDMRFDH IDTNNMVLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-27	15	116	66	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-27	15	116	66	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-27	15	116	66	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-27	15	116	66	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-27	15	116	69	172	NAC domain-containing protein 19
3swm_B	6e-27	15	116	69	172	NAC domain-containing protein 19
3swm_C	6e-27	15	116	69	172	NAC domain-containing protein 19
3swm_D	6e-27	15	116	69	172	NAC domain-containing protein 19
3swp_A	6e-27	15	116	69	172	NAC domain-containing protein 19
3swp_B	6e-27	15	116	69	172	NAC domain-containing protein 19
3swp_C	6e-27	15	116	69	172	NAC domain-containing protein 19
3swp_D	6e-27	15	116	69	172	NAC domain-containing protein 19
4dul_A	6e-27	15	116	66	169	NAC domain-containing protein 19
4dul_B	6e-27	15	116	66	169	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10024908

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002307652.1	9e-80	NAC domain-containing protein 21/22
TrEMBL	B9H8N9	2e-78	B9H8N9_POPTR; Uncharacterized protein
STRING	Lus10024908	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-63	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Lus10024908