PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 18186.2 Da PI: 6.5797 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs+ L H+++H Lus10024875 22 YVCNFCRKDFSSAQALGGHMNVH 44 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.43E-6 | 19 | 48 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 22 | 44 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEKTCRTRTK PRDPHPHHRS WYVCNFCRKD FSSAQALGGH MNVHRLDRAR LLLLPPSSSS 60 SSSSSPSHLS PPSDPLHGST DDDDDYDDKE QYHRHPTNLQ LTTFFPTHRE SVLLMASHKL 120 KDEEDQQEEQ AVRLDLGMEA AAAAPKPALD LELRLGCFTS V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024875 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10024875 | 1e-115 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-11 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024875 |