PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024871
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 465aa    MW: 50852.3 Da    PI: 6.2517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024871genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13320366455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Lus10024871 320 NHVEAERQRREKLNQKFYALRAIVPNiS------KMDKASLLGDAITYINDLQ 366
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-3848223IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.926316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.03E-15319370No hitNo description
SuperFamilySSF474594.45E-18319386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-18320378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGENFWSSSD EKAMAESILG SEACEFLISS NSKLRSTELV SSPSNLGLQQ GLHQLVEGTE  60
WNYVILWHAS GTKSTVDLLT WGDGICRDPK DAGGKLEGGG EKREEAKKLV LQKLRSLSTT  120
HVAVSLDGVS DVEMFYLVSM YFRFWSDSAT GDGAMESYKS GRLIWASDRA NCLDQYQLRS  180
VLAEAAGFQT VVFVPVKSGV LELGSVKQIH EESSLVKSAA TIFGESNQTK VCPKIFGHEL  240
SLGSSKPRSM SISFSPKVEN ELVFNSDSYT IQELSTGQVY GSSSNNGCSG SGTAELAIGD  300
ERKPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AIVPNISKMD KASLLGDAIT  360
YINDLQAKIK VMETESGGNN KHVMMPEIDF HPRQDDAIVT VSSPLVDHPV GSIIEKFREH  420
QVTAHECNVS STEEGKIVHT FSIRTQSGAA EQLKQKLVAA LVPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-29314375263Transcription factor MYC2
5gnj_B8e-29314375263Transcription factor MYC2
5gnj_E8e-29314375263Transcription factor MYC2
5gnj_F8e-29314375263Transcription factor MYC2
5gnj_G8e-29314375263Transcription factor MYC2
5gnj_I8e-29314375263Transcription factor MYC2
5gnj_M8e-29314375263Transcription factor MYC2
5gnj_N8e-29314375263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299GGKLEGGG
2301309RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024871
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8307524e-46EU830752.1 Linum usitatissimum clone LU0010B01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021676931.10.0transcription factor bHLH3
SwissprotA0A3Q7H2161e-157MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A343IVG00.0A0A343IVG0_HEVBR; LMYC14
STRINGLus100248710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-150bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]