PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024826
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 780aa    MW: 86338.7 Da    PI: 4.7579
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024826genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.3e-136536951052
                  HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    +++L e F +nryp+++++e+LAk+l+Lt rqV  WF N R
  Lus10024826 653 AATQRLRESFVENRYPNHSTKEKLAKELELTVRQVGKWFENAR 695
                  57899************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.39E-9191252IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.7E-8192251IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.742199252IPR019787Zinc finger, PHD-finger
SMARTSM002491.9E-4201250IPR001965Zinc finger, PHD-type
SuperFamilySSF466892.14E-11638698IPR009057Homeodomain-like
SMARTSM003895.8E-9639705IPR001356Homeobox domain
PROSITE profilePS5007113.005641701IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-14650713IPR009057Homeodomain-like
CDDcd000869.10E-11652695No hitNo description
PfamPF000469.1E-11653695IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MSQTSPHSDD QKSTNCEQFK TTSTQIMSSP SCLERWAKGT PKSSKKSMST PSAGCDRKLR  60
SKSQDKQKAT ESSGKQKVSE SSGKSANVSS DGEKRRRIKK RRSKEAVTNE YKRIRSHLRY  120
LLQRMKFEQS LIVAYSGEGW KGQNLEKLKP EKELQRASSD IFRLKTKVRE LFKHIDSLCA  180
EGSFPASLFD SDGEISSEDI YCAKCQSKEV TLENDIILCD GACDRGFHQF CLVPHLLNEN  240
MSSDFCLVCQ QFLPMTRAGC ALDVIAKLIA LVFLMTTFEP IYLLVIAGRE MMHSLDLSMK  300
HELKVFPEAA ATVSAPDIGS NFGLPSDDSD DGDYGPDDPE LEQKNEVDGS GSDESAFTSA  360
SEELGVSNNE KLLGLPSDDS EDDDYNPNDP YLDETVKEED ESSGSDFSSD SEDLDAVLEN  420
DEQPRAEGNL SFAQHGKTKN RSLNNELLST SNPVDGVDGS HIDKYLGLPS DDSEDDDYNP  480
DGPYPDGTMK QESSGSDFSS DSEYLDAVHE NDELPGANGN HSNVELNGKT NQSLTNELSS  540
TSTAVEGMDG SLSFTRKRNV DRLDYKKLYD ETYGNGSSDS SDDEDYTGTV RQKVRKLSTE  600
TAPFSTSRTD VVGKSALKSF EIKQSLGDND DQGSSLSTPI RKRNAIYKKL GEAATQRLRE  660
SFVENRYPNH STKEKLAKEL ELTVRQVGKW FENARWNYNH PADRASKRSS ANDNPVVPST  720
DDNKQFNVGQ NEDTVKKDDD VAAKLQGQVA SKLVSRGRKR KPDKQIMGEE AISGQRVHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397KRRRI
298103KKRRSK
3756764GRKRKPDKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100248260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-59Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain