PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024811
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 342aa    MW: 36932.7 Da    PI: 6.5535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024811genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16173219455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Lus10024811 173 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 219
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.32E-18165223No hitNo description
SuperFamilySSF474595.1E-20166228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-19166227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-13173219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MANLYGAAQS PTAADPPPPP SETEEISSFL HQFLQNQNAS SSTSSCSAKF MFHHPHFSSP  60
PPHHHHQQHF QPHQDAASPL DFLDRQHRLA HSNPDCPNPG VNFSDPGLYF SKDALASDNA  120
AAAGSKRRGV AVEDDLGSGG DFSCDSGGGE ASEMPTETVR PRGSSKRSRA AEVHNLSEKR  180
RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLTLRNG LSLHPMCLPP  240
GVLQPMQLPL TGLSFEEGNN NGLLTNSTLT AGSFSATEQP HLQTGHNLPH NQCTVSNGQP  300
SGTNLTASEN PFAFEQPYQE ICREGTADRK QTVNNSSPGV S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533722.11e-106transcription factor SPATULA isoform X2
TrEMBLA0A067KZV71e-103A0A067KZV7_JATCU; Uncharacterized protein
STRINGLus100248110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-42bHLH family protein