PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 421aa MW: 48042.8 Da PI: 6.3896 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.9e-05 | 170 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H r H Lus10024807 170 YVCGVCGRKCKTNLDLKKHFRQlH 193 9******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.99 | 170 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0092 | 170 | 193 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 172 | 193 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 3.07E-10 | 182 | 324 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MSPLLTSVDT SHLLKPQILF SQTSLHSSHS FSPANPDRQF KFNGLILQSP RSYLRRRCPI 60 TACYASASAS AAAESEINMV KNKQGTYTAR QNKVVVLWDL DNKPPRGPPY NAALALKEMA 120 ENFGEVIEMS AYANRHAFVH LPQWVVEDRR EKRQQDILER KGIVSSTEPY VCGVCGRKCK 180 TNLDLKKHFR QLHERERQKK VNRMKSQKGK KRQKNKERFI SGNEKYNNEA RRLLTPKVGY 240 GLAAELRRAG VYVKMVEDKP QAADWAVKKQ IEHSMSRGVD WVVLVSDDSD FRGILMRARE 300 SSLGTVVVGD RDRALGKHAD LWVPWIGVEN GDVSEQDLVP KRRTSEDSDS DSDDEFECDS 360 VSHFAEEDVG YYEWSDVGTV VEELTGRRRI SIFSEEEEEE DGDYELWDSD DEDDSFLHHI 420 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024807 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021662197.1 | 0.0 | uncharacterized protein LOC110651241 | ||||
TrEMBL | U5FNF9 | 0.0 | U5FNF9_POPTR; Uncharacterized protein | ||||
STRING | Lus10024807 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-134 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10024807 |