PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024689
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 483aa    MW: 55033.9 Da    PI: 8.2927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024689genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.8e-14146231297
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +kv++ps+v+    l+l k f ++h  +  +++++ lede+g+ +  ++ +rk++    l++GWk F+ +++L +gD +vF+l++ ++f  ++ ++
  Lus10024689 146 IKVMLPSYVSG--GLRLEKGFGTKHLPD--KDTMIDLEDEDGNIYYARYLVRKQG----LSGGWKLFATDHKLVAGDALVFQLVEPTKF--KIYIV 231
                  68999999985..59**********534..5679***************666666....***********************9987777..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-18139232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-20140232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.25143234IPR003340B3 DNA binding domain
CDDcd100173.63E-18143232No hitNo description
SMARTSM010198.5E-16145234IPR003340B3 DNA binding domain
PfamPF023626.1E-12146232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MHVQPAPFKR FKWFNLKYSR GSQNVPHQVI RYFFEGSRDE DKQSTVEKLF GNNSLANSIQ  60
PGDSTPDIIG KLNDDLSADT DMLISPFSRN QTQEGGFVRN QSTISKARKR VAVETVYVNG  120
FEVENSVLLK AQEIKASLPE NLPSMIKVML PSYVSGGLRL EKGFGTKHLP DKDTMIDLED  180
EDGNIYYARY LVRKQGLSGG WKLFATDHKL VAGDALVFQL VEPTKFKIYI VRGRRSSEEI  240
DVDSGLLQMD SHKKKLKSEN LSKGYKQRIV GATLLSNNNS KRHESDDRVE GNFGFSISDG  300
IRMAESTTID FKQVKSFDDF DIVVNGLVIN CELSRHLQLK YYELCNSQKL FLHQHLLSGL  360
NCKLIVGVIA ETINIADEIR ASELTQQKKD EFTTWEKTLV AFEKLGMNVE FILARLRQLM  420
GLCDDVNRRK RLNTERIRVE EEVKVLKAKL EESVERIKRI DGEMEVDHEV KFRELAKAPW  480
SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652673.11e-116B3 domain-containing protein Os01g0234100-like
STRINGLus100246890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-24B3 family protein