PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024631
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 632aa    MW: 70499.1 Da    PI: 4.7647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024631genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-06414457755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r+ R+ + ++f  L++++P+ +      K + ++iL +++eY+++L+
  Lus10024631 414 SSARKQRELLDQKFMILKSIVPSvN------KADEVSILDETIEYLQELE 457
                  55677888999************55......9***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-518185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088812.163407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-12408472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-7410461No hitNo description
Gene3DG3DSA:4.10.280.101.6E-10411474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-7413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASGNISKQL ALAVRSIQWS YAIFWSISAE QPGVLSWGDG YYNGDIKTRK TVQTMEVETD  60
SEFGLQRSEQ LRELYQSLSS GEANPQSRRP SAALSPEDLT DTEWYYLVCM SFMFNDGHGL  120
PGRSLANSQQ IWLCNAHSAD CKVFTRSLLA KTVVCFPILG GVLEIGSTEN VSENYSLIQQ  180
IRSLFLDNPD PLTSENWNTK QDEELEKILM EARLVPGVEC EELEMDDVSP YDSSNNEGAD  240
QDSFIVEGIG CEDDAAEASQ VESWLVMDEN LSPGMNHSLN SSESISQTVA DTEKLVTFPS  300
HDSEACNRVK FAAPYLLPSD DLHYQCALAS IFKTSHPLML GPHHGNLRQE SSFVSWKKVE  360
QRVVRCGTQQ SMLKKILLDV PQNHIYFYSR APENGSMDGV LRSEACKYGM NHISSARKQR  420
ELLDQKFMIL KSIVPSVNKA DEVSILDETI EYLQELERRV EQLESRPEKT DSEVRTERRH  480
QRNSERTSDN YGSINRSGNA RRIVGNKRAK PSEIDSTRPK IEPNIASDDG QSVVKNVTVS  540
MNMKDIIIKV QCPLREGILL EIMDELGRLG LDSHSVQSTT TDGILSLTIE SKQKGLSGTA  600
AGSLGAIKRA IERVTMEKNN CHLNDVLVDG Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-201918524192Transcription factor MYC3
4rqw_B4e-201918524192Transcription factor MYC3
4rs9_A4e-201918524192Transcription factor MYC3
4yz6_A4e-201918524192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021668375.10.0transcription factor GLABRA 3-like isoform X1
RefseqXP_021668376.10.0transcription factor GLABRA 3-like isoform X1
RefseqXP_021668378.10.0transcription factor GLABRA 3-like isoform X1
RefseqXP_021668379.10.0transcription factor GLABRA 3-like isoform X2
TrEMBLA0A067JN600.0A0A067JN60_JATCU; Uncharacterized protein
STRINGLus100246310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-146bHLH family protein