PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10024601

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 400aa MW: 46428.1 Da PI: 6.9099

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10024601	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++ ++ + e+++wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++++ Lus10024601 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYV- 102 69**************************.9***********954555542556**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg++ktLvfykgrap+g+k+dW+mheyrle Lus10024601 103 RHSLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-61	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	59.639	7	158	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQNDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YVRHSLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GAPQASEEGW VVCRVFKKRL PTTMRRYGDQ YDSPCWYDDQ 180 SSFMHELDSP RQISHSHHQP YPSPPSSYLH HHHHHHQQQQ QHYLHCKQEL DQLQYNMTHN 240 HHHNNDPSFL QLPQLESPKV PTSNTNCNNN NSSSSSMVPN YSYDKIPQEE VLHIQQSHHH 300 QQQHNLGSFP NSNAMSDQEQ VVATDWRVLD KFVASQLSNE AGNNSASKEA THVNNVSPSS 360 SFHVANENVG VTNDESKRSD TLEEYASTLT STCEIDLWK*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQNDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YVRHSLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GAPQASEEGW VVCRVFKKRL PTTMRRYGDQ YDSPCWYDDQ  180
SSFMHELDSP RQISHSHHQP YPSPPSSYLH HHHHHHQQQQ QHYLHCKQEL DQLQYNMTHN  240
HHHNNDPSFL QLPQLESPKV PTSNTNCNNN NSSSSSMVPN YSYDKIPQEE VLHIQQSHHH  300
QQQHNLGSFP NSNAMSDQEQ VVATDWRVLD KFVASQLSNE AGNNSASKEA THVNNVSPSS  360
SFHVANENVG VTNDESKRSD TLEEYASTLT STCEIDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	6	159	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10024601

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021661915.1	1e-176	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-151	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A251LEQ3	1e-174	A0A251LEQ3_MANES; Uncharacterized protein
STRING	Lus10024601	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-142	NAC 007

Link Out ? help Back to Top
Phytozome	Lus10024601

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]