PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 275aa MW: 31328.4 Da PI: 6.5885 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.5 | 2e-07 | 223 | 256 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Lus10024485 223 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 256 468*****************************87 PP | |||||||
2 | ELK | 25.6 | 2.8e-09 | 177 | 198 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Lus10024485 177 ELKIELKQGFKSRIEDVREEIL 198 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03790 | 1.4E-5 | 21 | 38 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.4E-19 | 55 | 110 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.5E-15 | 59 | 109 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 177 | 197 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.612 | 197 | 260 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.11E-16 | 199 | 264 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-10 | 199 | 264 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.20E-11 | 200 | 261 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-25 | 204 | 262 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.9E-18 | 217 | 256 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MQEPSLGMMG GGEMEQSSRE VKAEIATHPL YEQLLGAHWL SQSHHLLRSY AGSGCNLTPH 60 ERQDLDNFLA QYLIVLCGFK EQLQQHVRVH AVEAVMPCRE IETSFQSLTG MSLGEGTGAT 120 MSDDEDDQSM HMDFSLDQPG LMTSSSSVGD AHDMMMGFGP LLPTESERSL MERVRQELKI 180 ELKQGFKSRI EDVREEILRK RRAGKLPGDT TTVLKNWWQQ HSKWPYPTED DKAKLVEETG 240 LQLKQINNWF INQRKRNWHT NSQSVTSLKS KRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 273 | RKRNWHTNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024485 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143939.1 | 1e-155 | PREDICTED: homeobox protein knotted-1-like 7 | ||||
Refseq | XP_007209425.1 | 1e-155 | homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-143 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A2P5CSP5 | 1e-155 | A0A2P5CSP5_TREOI; Knotted-like homeobox transcription factor | ||||
STRING | Lus10024485 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-141 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024485 |
Publications ? help Back to Top | |||
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