PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 191aa MW: 20107.2 Da PI: 10.3245 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Lus10024428 49 FECKTCSRKFSSFQALGGHRASH 71 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.9E-11 | 48 | 73 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.15E-9 | 48 | 122 | No hit | No description |
SMART | SM00355 | 0.4 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.7E-10 | 100 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAMKRSRADG SEFESLDLAK CLIYLSHGFN AAANSKPRQG GDSAAADVFE CKTCSRKFSS 60 FQALGGHRAS HKRPKTSLGS DKLGHDDGKL LGLMTKPKMH ECTICGVEFA LGQALGGHMR 120 RHRAASMATA TPTLAAAGRG PVAAAVGGSK VPVLMRTSSS KRVFGLDLNL TPLENDLEYL 180 FGKMAPKVSV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024428 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533000.1 | 6e-72 | zinc finger protein ZAT11 | ||||
TrEMBL | B9T431 | 1e-70 | B9T431_RICCO; Zinc finger protein, putative | ||||
STRING | Lus10024428 | 1e-137 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 3e-46 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10024428 |